prot_A-nodosum_M_contig942.30.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig942.30.1
Unique Nameprot_A-nodosum_M_contig942.30.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length207
Homology
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.170e-42
Identity = 81/206 (39.32%), Postives = 123/206 (59.71%), Query Frame = 0
Query:    1 MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            +L  YVDD+L+TG     +   K  LM  F M+D+GEV   + I ++RD + GTL++SQ  YA+   +R+GM    PV+TPG G EL+ +  + + LG +  + +QA+ GSL++L   T +D ++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +
Sbjct:  101 ILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA--NPDNGRSITGYLFFLGGGLISYGA 303          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 5.500e-42
Identity = 83/206 (40.29%), Postives = 126/206 (61.17%), Query Frame = 0
Query:    1 MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            +L  YVDD+L+TG     +   K  LM  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +QA+ GSL++L   T +D+++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +
Sbjct:  412 ILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGA 614          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.890e-42
Identity = 83/206 (40.29%), Postives = 126/206 (61.17%), Query Frame = 0
Query:    1 MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            +L  YVDD+L+TG     +   K  LM  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +QA+ GSL++L   T +D+++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +
Sbjct: 1191 ILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGA 1393          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.080e-41
Identity = 89/205 (43.41%), Postives = 123/205 (60.00%), Query Frame = 0
Query:    2 LTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            LT YVDDLL+ G  S  I  VK  L   F M+DLGE S  L +EI RD +A TL++SQE Y KS LERFGM   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S
Sbjct:  115 LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTMLANAPMSFRS 316          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.260e-40
Identity = 89/205 (43.41%), Postives = 123/205 (60.00%), Query Frame = 0
Query:    2 LTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            LT YVDDLL+ G  S  I  VK  L   F M+DLGE S  L +EI RD +A TL++SQE Y KS LERFGM   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S
Sbjct:  675 LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTMLANAPMSFRS 876          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5JN29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN29_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 7.250e-40
Identity = 79/206 (38.35%), Postives = 122/206 (59.22%), Query Frame = 0
Query:    1 MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            +L  YVDD+L+TG     +   K  LM  F M D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +Q + GSL++L   + +D+++ V +  R  + P    M AAK +L YL G PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +
Sbjct:  205 ILAIYVDDILITGGNKEIVSRKKKDLMDSFDMIDMGEVKLVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQTITGSLLYLAQCSRYDLSYAVHQLTRACANPAQVHMAAAKHVLWYLGGTPDLPIVYKK-GQFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGA 407          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.110e-39
Identity = 88/205 (42.93%), Postives = 123/205 (60.00%), Query Frame = 0
Query:    2 LTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            LT YVDDLL+ G  S  I  VK  L   F M+DLGE S  L +EI RD +A TL++SQE Y KS LERFG+   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S
Sbjct: 1344 LTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTVLANAPMSFRS 1545          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.410e-38
Identity = 72/180 (40.00%), Postives = 111/180 (61.67%), Query Frame = 0
Query:   27 MGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            M  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +Q + GSL++L   T +D+++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGA 177          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5L0J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.230e-36
Identity = 74/184 (40.22%), Postives = 113/184 (61.41%), Query Frame = 0
Query:    1 MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDP 184
            +L  YVDD+L+TG     +   K  LM  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +QA+ GSL++L   T +D+++ V +  R  ++P    M AAK +LRYLRG PD+ I +K+ G   L  + DSS+   G P
Sbjct:  657 ILAIYVDDMLITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACAKPAQVHMAAAKHLLRYLRGRPDLPIVHKK-GQFILSCFIDSSFGAAGLP 839          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.400e-36
Identity = 86/218 (39.45%), Postives = 124/218 (56.88%), Query Frame = 0
Query:    2 LTPYVDDLLVTGIFSSDIHEVKNT-------------LMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS 206
            LT YVDDLL+ G  S  I  + ++             L   F M+DLGE S  L ++I RD +A TL++SQE Y KS LERFGM   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S
Sbjct:  323 LTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTMLANAPMSFRS 537          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW03_9PHAE3.170e-4239.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE5.500e-4240.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE5.890e-4240.29Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5L5U2_9PHAE1.080e-4143.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.260e-4043.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN29_9PHAE7.250e-4038.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJH6_9PHAE2.110e-3942.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC04_9PHAE2.410e-3840.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0J0_9PHAE2.230e-3640.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE3.400e-3639.45Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..81
e-value: 1.2E-13
score: 51.2
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 79..192
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 79..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:195118..195738 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.30.1mRNA_A-nodosum_M_contig942.30.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig942 194775..195789 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig942.30.1 ID=prot_A-nodosum_M_contig942.30.1|Name=mRNA_A-nodosum_M_contig942.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=207bp
MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDL
KAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQ
LTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILR
YLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGG
PIHFSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2