mRNA_A-nodosum_M_contig942.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.30.1
Unique NamemRNA_A-nodosum_M_contig942.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 2.720e-59
Identity = 119/309 (38.51%), Postives = 181/309 (58.58%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVL 930
            SD CVYI     E   +L  YVDD+L+TG     +   K  LM  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +QA+ GSL++L   T +D+++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +  Q +  Q+T  E EL AL+  A+  +Y+   + E+G++ F +  +  DS  AL  A N  +SS TK IA+ F  L++  + +R+ L
Sbjct:  397 SDPCVYIFVSGDE-LTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTV-EAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITL 700          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.070e-58
Identity = 114/309 (36.89%), Postives = 178/309 (57.61%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVL 930
            SD CVY+   S    V+LT YVDD+L+TG     + + K  L   F M+D+GEV   L I+++RD + GTL++SQE Y  + LERFGM    PV+T G G E++    + + LG    K YQ++ GS+++L   T FD+++   + ++  S P    M AAK +LRYLRG P + I YKR G   L  + DSS+    +P+  RS +G +FFL+GG I + +  Q +  QST  E E+ AL+  A+  +Y+   + E+ ++ F +  +  DS  AL  AGN  +S  TK +A+ +  +++ +   ++ L
Sbjct:  156 SDPCVYVYT-SGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA--NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTV-EAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITL 459          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.250e-57
Identity = 115/309 (37.22%), Postives = 179/309 (57.93%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVL 930
            SD CVY+   S    V+LT YVDD+L+TG     + + K  L   F M+D+GEV   L I+++RD + GTL++SQE Y  + LERFGM    PV+TPG G E++    + + LG    K YQ++ GS+++L   T FD+++   + ++  S P    M AAK +LRYLRG P + I YKR G   L  + DSS+    +P+  RS +G +FFL+GG I + +  Q +  QST  E E+ AL+  A+  +Y+   + E+ ++ F +  +  DS  AL  AGN  +S  TK +A+ +  +++ +   ++ L
Sbjct:  364 SDPCVYVYT-SGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA--NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTV-EAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITL 667          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.430e-57
Identity = 111/288 (38.54%), Postives = 166/288 (57.64%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCT 867
            SD CVY+   +    V+LT YVDD+L+TG     + + K  L   F M+D+GEV   L I ++RD + GTL++SQE Y  + LERFGM    PV+TPG G E++    + + LG    K YQ++ GS+++L   T FD+++   + ++  S P    M AAK +LRYLRG P + I YKR G   L  + DSS+    +P+  RS +G +FFL+GG I + +  Q +  QST  E E+ AL+  A+  +Y+   + E+ ++ F +  +  DS  AL  AGN  +S  T
Sbjct:   37 SDPCVYVYT-TGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKR-GQFRLAAFTDSSFGA--NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTV-EAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRT 319          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.350e-57
Identity = 121/315 (38.41%), Postives = 179/315 (56.83%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGW-RNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVLDFVST 945
            SD CVY+   +    + LT YVDDLL+ G  S  I  VK  L   F M+DLGE S  L +EI RD +A TL++SQE Y KS LERFGM   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S LQ +   ST  E EL+A     K  ++   ++ E+G+ + F    + CD+   L A GN  +SS TK IA+ F  +++ + E ++ + +  T
Sbjct:   99 SDPCVYLYDHNGAK-IYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTM-EAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPT 408          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 6.510e-57
Identity = 117/299 (39.13%), Postives = 175/299 (58.53%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLK 900
            SD CVYI     E   +L  YVDD+L+TG     +   K  LM  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +QA+ GSL++L   T +D+++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +  Q +  Q+T  E EL AL+  A+  +Y+   + E+G++ F +  +  DS  AL  A N  +SS TK IA+ F  L+
Sbjct: 1176 SDPCVYIFVSGDE-LTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTV-EAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLR 1469          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.590e-56
Identity = 114/309 (36.89%), Postives = 178/309 (57.61%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVL 930
            SD CVY+   S    V+LT YVDD+L+TG     + + K  L   F M+D+GEV   L I+++RD + GTL++SQE Y  + LERFGM    PV+TPG G E++    + + LG    K YQ++ GS+++L   T FD+++   + ++  S P    M AAK +LRYLRG P + I YKR G   L  + DSS+    +P+  RS +G +FFL+GG I + +  Q +  QST  E E+ AL+  A+  +Y+   + E+ ++ F +  +  DS  AL  AGN  +S  TK + + +  +++ +   ++ L
Sbjct:  520 SDPCVYVYT-SGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA--NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTV-EAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITL 823          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.040e-55
Identity = 122/315 (38.73%), Postives = 180/315 (57.14%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGW-RNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVLDFVST 945
            SD CVY+   +    + LT YVDDLL+ G  S  I  VK  L   F M+DLGE S  L +EI RD +A TL++SQE Y KS LERFGM   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S LQ +   ST  E EL+A     K  ++   ++ E+G+ + F    + CD+   L A GN  +SS TK IA+ F  +++ + E ++ + +V T
Sbjct:  659 SDPCVYLYDHNGAK-IYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTM-EAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRT 968          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.430e-53
Identity = 120/315 (38.10%), Postives = 179/315 (56.83%), Query Frame = 1
Query:    4 SDSCVYIIRGSRETFVMLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGW-RNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVLDFVST 945
            SD CVY+   +    + LT YVDDLL+ G  S  I  VK  L   F M+DLGE S  L +EI RD +A TL++SQE Y KS LERFG+   KP +TPG G E++    E   L  + T++YQ ++GSL+++     +D+ +   + AR M++P+   MVAAK  LRYL G  D  ITYK+ G K L  + DS++A   +P+  +S S  +  L+  P+ F S LQ +   ST  E EL+A        ++   ++ E+G+ + F    + CD+   L A GN  +SS TK IA+ F  +++ + E ++ + +V T
Sbjct: 1328 SDPCVYLYDHNGAK-IYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFK-LATFSDSNWAN--NPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTM-EAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPT 1637          
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.950e-53
Identity = 101/267 (37.83%), Postives = 159/267 (59.55%), Query Frame = 1
Query:  130 MGEFSMSDLGEVSETLEIEIERDLKAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQLTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILRYLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGGPIHFSS*LQKVVIQSTTTEEELIALNSCAKSGIYLLEVLREMGWRNFENFHLCCDSQVALVAAGNPKYSSCTKRIAVMFGCLKQWMEENRLVL 930
            M  F M+D+GEV   + IE++RD + GTL++SQ  YA+  L+R+GM    PV+TPG G EL+ +  + + LG +  + +Q + GSL++L   T +D+++ V +  R  + P    M AAK +LRYLRG PD+ I YK+ G   L  + DSS+    +P+  RS +G +FFL GG I + +  Q +  Q+T  E EL AL+  A+  +Y+   + E+G++ F +  +  DS  AL  A N  +SS TK IA+ F  L++  + +R+ L
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA--NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTV-EAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF46_9PHAE2.720e-5938.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE6.070e-5836.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.250e-5737.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE1.430e-5738.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE2.350e-5738.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE6.510e-5739.13Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KE92_9PHAE2.590e-5636.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE3.040e-5538.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.430e-5338.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC04_9PHAE2.950e-5337.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:194775..195789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog15368.BRADI3G03845.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,Retrotran_gag_3,gag_pre-integrs,rve,zf-CCHC
Model size1015
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.35e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5Q@33090|Viridiplantae,3GFFK@35493|Streptophyta,3M7B5@4447|Liliopsida,3IKJW@38820|Poales
Descriptiontransposition, RNA-mediated
Cds size621
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.0261047-UTR-A-nodosum_M_contig942:194774..1951171680870439.0261047-UTR-A-nodosum_M_contig942:194774..195117Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 194775..195117 -
1680870439.054261-UTR-A-nodosum_M_contig942:195738..1957891680870439.054261-UTR-A-nodosum_M_contig942:195738..195789Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 195739..195789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.0412219-CDS-A-nodosum_M_contig942:195117..1957381680870439.0412219-CDS-A-nodosum_M_contig942:195117..195738Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 195118..195738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.30.1prot_A-nodosum_M_contig942.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 195118..195738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.30.1

>prot_A-nodosum_M_contig942.30.1 ID=prot_A-nodosum_M_contig942.30.1|Name=mRNA_A-nodosum_M_contig942.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=207bp
MLTPYVDDLLVTGIFSSDIHEVKNTLMGEFSMSDLGEVSETLEIEIERDL
KAGTLSLSQEKYAKSSLERFGMMNCKPVNTPGIGRELTAKSEESEYLGGQ
LTKEYQALIGSLIFLTTNTIFDVTFTVREAARFMSRPTSARMVAAKRILR
YLRGAPDVKITYKREGSKELLGYCDSSYATTGDPERARSASGTVFFLSGG
PIHFSS*
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mRNA from alignment at A-nodosum_M_contig942:194775..195789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.30.1 ID=mRNA_A-nodosum_M_contig942.30.1|Name=mRNA_A-nodosum_M_contig942.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1015bp|location=Sequence derived from alignment at A-nodosum_M_contig942:194775..195789- (Ascophyllum nodosum dioecious)
ATTTCTGACTCTTGCGTTTACATTATTAGGGGATCACGCGAAACGTTCGT AATGTTGACACCTTATGTTGATGATCTGCTGGTCACCGGAATCTTTAGCA GTGACATCCATGAAGTAAAAAATACCTTGATGGGAGAGTTCTCAATGAGT GACTTAGGTGAGGTGTCGGAAACGTTGGAAATTGAAATTGAAAGAGACCT TAAAGCAGGAACACTATCACTAAGCCAAGAAAAGTACGCCAAGTCTAGCT TGGAGCGATTTGGAATGATGAATTGTAAGCCAGTAAATACACCTGGTATA GGGAGAGAATTAACAGCGAAGTCCGAAGAAAGTGAATACCTAGGAGGCCA GCTGACAAAGGAGTATCAAGCACTGATAGGTTCACTAATATTTCTAACTA CGAATACTATATTCGATGTTACTTTTACGGTAAGGGAAGCAGCGAGGTTT ATGAGCAGGCCAACATCCGCACGCATGGTTGCAGCGAAACGTATACTTAG GTATCTACGCGGTGCACCTGACGTAAAGATCACGTACAAAAGGGAAGGAA GCAAAGAGTTATTGGGATATTGTGATTCGTCGTATGCGACGACTGGAGAT CCAGAACGGGCACGTTCGGCCTCTGGCACAGTGTTCTTTTTGTCGGGAGG ACCCATTCACTTTTCAAGCTAACTACAAAAAGTCGTTATCCAATCAACCA CCACAGAAGAAGAATTGATAGCACTGAATAGCTGTGCAAAAAGCGGTATT TATCTATTAGAGGTACTTCGGGAAATGGGTTGGAGAAACTTTGAAAACTT TCATTTGTGTTGTGATAGCCAAGTAGCGCTTGTGGCAGCTGGAAACCCCA AATATTCAAGTTGCACAAAGCGTATCGCTGTCATGTTTGGTTGCCTTAAG CAATGGATGGAAGAAAACAGATTGGTATTGGACTTTGTGTCAACCAATTA AGGATCGGCTAAGTGATATAATGACAAAGTTCTGCGAGAAATATACTTAT ACTGGCTTGAGGCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig942:194775..195789-

>mRNA_A-nodosum_M_contig942.30.1 ID=mRNA_A-nodosum_M_contig942.30.1|Name=mRNA_A-nodosum_M_contig942.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=621bp|location=Sequence derived from alignment at A-nodosum_M_contig942:194775..195789- (Ascophyllum nodosum dioecious)
ATGTTGACACCTTATGTTGATGATCTGCTGGTCACCGGAATCTTTAGCAG
TGACATCCATGAAGTAAAAAATACCTTGATGGGAGAGTTCTCAATGAGTG
ACTTAGGTGAGGTGTCGGAAACGTTGGAAATTGAAATTGAAAGAGACCTT
AAAGCAGGAACACTATCACTAAGCCAAGAAAAGTACGCCAAGTCTAGCTT
GGAGCGATTTGGAATGATGAATTGTAAGCCAGTAAATACACCTGGTATAG
GGAGAGAATTAACAGCGAAGTCCGAAGAAAGTGAATACCTAGGAGGCCAG
CTGACAAAGGAGTATCAAGCACTGATAGGTTCACTAATATTTCTAACTAC
GAATACTATATTCGATGTTACTTTTACGGTAAGGGAAGCAGCGAGGTTTA
TGAGCAGGCCAACATCCGCACGCATGGTTGCAGCGAAACGTATACTTAGG
TATCTACGCGGTGCACCTGACGTAAAGATCACGTACAAAAGGGAAGGAAG
CAAAGAGTTATTGGGATATTGTGATTCGTCGTATGCGACGACTGGAGATC
CAGAACGGGCACGTTCGGCCTCTGGCACAGTGTTCTTTTTGTCGGGAGGA
CCCATTCACTTTTCAAGCTAA
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