prot_A-nodosum_M_contig942.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig942.1.1
Unique Nameprot_A-nodosum_M_contig942.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length396
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig942.1.1 vs. uniprot
Match: A0A6H5JBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.190e-30
Identity = 105/285 (36.84%), Postives = 133/285 (46.67%), Query Frame = 0 
Query:   90 VPDREEMGAAVAVAAVASARDRAEVQAAISVLTCWNILAGAEEAGAY-MVHLEVAAVFGSGGDWYTANQNIALTRNSFQEASHSSSLPLWPWATLASGSINDFNEQEATILVGNLEWLLEEDVRDKLDEIAVADVKVYRRAHAEANGVEPFQAGRSESQLLWQQLLLQATLCKRDSSGVGVDSTSEKASASFRTSLTPYAEQRPQARRGAAPGSRSNDSGVPTAKRISPNQAGGSVNAPPSQSCVVSEMEDGEWWRELDEHERGRGMAAVNALPRHPGWKPGQWR 373
            VP  E M    A A  A+A + AE Q AIS L  WN++   E      M+ +EV A FG  GDWYTA++ I LT +      HSS+L       L+S + +               W    DV  KLDE   ADV+VY  A   +   E  +AG          LLL+ TLCKR S   G  +  E    + + +LTPYAE+ P                   A  ISP++           S VVSE+ D EWWR  +E E GRGM AV+ALPR P WKPG W+
Sbjct:  160 VPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTTRETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDG---TGHSSAL-------LSSATFD---------------WQPAPDVWSKLDEPMAADVRVYGTA---STPTEEQEAGL---------LLLRGTLCKRASGFGGRSTRDETTQGTMKAALTPYAERLPAV--------------AAEAVAISPSRP----------SVVVSEIRDEEWWRAREEEESGRGMDAVDALPRLPRWKPGDWK 383
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBU0_9PHAE7.190e-3036.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..332

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:4299..5486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.1.1mRNA_A-nodosum_M_contig942.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig942 4299..12648 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig942.1.1 ID=prot_A-nodosum_M_contig942.1.1|Name=mRNA_A-nodosum_M_contig942.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=396bp
MTPTEAAAMPRISGAHVVFSVQRQEVGHLDSPSARGVNVTVLLQLSLKGD
RTEQGRRPEFAPPGMQDYEANRMSSRSLEAVSDAEAPIGVPDREEMGAAV
AVAAVASARDRAEVQAAISVLTCWNILAGAEEAGAYMVHLEVAAVFGSGG
DWYTANQNIALTRNSFQEASHSSSLPLWPWATLASGSINDFNEQEATILV
GNLEWLLEEDVRDKLDEIAVADVKVYRRAHAEANGVEPFQAGRSESQLLW
QQLLLQATLCKRDSSGVGVDSTSEKASASFRTSLTPYAEQRPQARRGAAP
GSRSNDSGVPTAKRISPNQAGGSVNAPPSQSCVVSEMEDGEWWRELDEHE
RGRGMAAVNALPRHPGWKPGQWRVFQDRTRKQRRRKKCRSIKYGV*
back to top