mRNA_A-nodosum_M_contig942.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.1.1
Unique NamemRNA_A-nodosum_M_contig942.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig942.1.1 vs. uniprot
Match: A0A6H5JBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.880e-40
Identity = 147/418 (35.17%), Postives = 193/418 (46.17%), Query Frame = 2
Query:  740 RAKDS-LKAAALHCIALDGLGDFPADHKLGLFEVAPADDTRAMTPTEAAAMPRISGAHVVFSV--QRQEVGHLDSPSARGVNVTVLLQLSLKGDRTEQGRRPEFAPPGMQDYEANRMSSRSLEAVSDAEAPIGVPDREEMGAAVAVAAVASARDRAEVQAAISVLTCWNILAGAEEAGAY-MVHLEVAAVFGSGGDWYTANQNIALTRNSFQEASHSSSLPLWPWATLASGSINDFNEQEATILVGNLEWLLEEDVRDKLDEIAVADVKVYRRAHAEANGVEPFQAGRSESQLLWQQLLLQATLCKRDSSGVGVDSTSEKASASFRTSLTPYAEQRPQARRGAAPGSRSNDSGVPTAKRISPNQAGGSVNAPPSQSCVVSEMEDGEWWRELDEHERGRGMAAVNALPRHPGWKPGQWR 1981
            RA +S +KAAA HC+A+D +G FPA+H LGLFE  P    R +  T     PR++ A V FS   QRQ  G  +S        T++ ++ L+ D T + R       G     + R +               VP  E M    A A  A+A + AE Q AIS L  WN++   E      M+ +EV A FG  GDWYTA++ I LT +      HSS+L       L+S + +               W    DV  KLDE   ADV+VY  A   +   E  +AG          LLL+ TLCKR S   G  +  E    + + +LTPYAE+ P                   A  ISP++           S VVSE+ D EWWR  +E E GRGM AV+ALPR P WKPG W+
Sbjct:   54 RATESDVKAAARHCVAVDEVGRFPANHALGLFETEPG---RLVLGT-----PRVTDASVEFSALPQRQNAGGSNSDETPATG-TIVFKVVLEVDNTGRWRE------GGGGTTSGRRTGEP------------VPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTTRETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDG---TGHSSAL-------LSSATFD---------------WQPAPDVWSKLDEPMAADVRVYGTA---STPTEEQEAGL---------LLLRGTLCKRASGFGGRSTRDETTQGTMKAALTPYAERLPAV--------------AAEAVAISPSRP----------SVVVSEIRDEEWWRAREEEESGRGMDAVDALPRLPRWKPGDWK 383          
BLAST of mRNA_A-nodosum_M_contig942.1.1 vs. uniprot
Match: A0A6H5JDA0_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDA0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.120e-5
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 3
Query:  570 AGREQHLMANNAVVTSTYNAVTFMPRSLFEQFRRLMGDQTTRQLSTKRDLLLPRSWTVQRTASKLLPFTAL 782
            AG EQ  MA+N+VVTS YN +TF+PRSLFEQFRR+              +L+   W      S L PF+ L
Sbjct:   25 AGEEQSAMADNSVVTSKYNVITFVPRSLFEQFRRIAN-----VYFLVISVLMMLGWYTDLFESPLAPFSTL 90          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBU0_9PHAE1.880e-4035.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDA0_9PHAE1.120e-545.07PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:4299..12648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2050
Hectar predicted targeting categoryother localisation
Exons3
Cds size1188
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870437.8913152-CDS-A-nodosum_M_contig942:4298..54861680870437.8913152-CDS-A-nodosum_M_contig942:4298..5486Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 4299..5486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.1792445-UTR-A-nodosum_M_contig942:5486..56811680870438.1792445-UTR-A-nodosum_M_contig942:5486..5681Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 5487..5681 -
1680870438.3323812-UTR-A-nodosum_M_contig942:10900..113241680870438.3323812-UTR-A-nodosum_M_contig942:10900..11324Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 10901..11324 -
1680870438.3487763-UTR-A-nodosum_M_contig942:12405..126481680870438.3487763-UTR-A-nodosum_M_contig942:12405..12648Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 12406..12648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.1.1prot_A-nodosum_M_contig942.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 4299..5486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.1.1

>prot_A-nodosum_M_contig942.1.1 ID=prot_A-nodosum_M_contig942.1.1|Name=mRNA_A-nodosum_M_contig942.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=396bp
MTPTEAAAMPRISGAHVVFSVQRQEVGHLDSPSARGVNVTVLLQLSLKGD
RTEQGRRPEFAPPGMQDYEANRMSSRSLEAVSDAEAPIGVPDREEMGAAV
AVAAVASARDRAEVQAAISVLTCWNILAGAEEAGAYMVHLEVAAVFGSGG
DWYTANQNIALTRNSFQEASHSSSLPLWPWATLASGSINDFNEQEATILV
GNLEWLLEEDVRDKLDEIAVADVKVYRRAHAEANGVEPFQAGRSESQLLW
QQLLLQATLCKRDSSGVGVDSTSEKASASFRTSLTPYAEQRPQARRGAAP
GSRSNDSGVPTAKRISPNQAGGSVNAPPSQSCVVSEMEDGEWWRELDEHE
RGRGMAAVNALPRHPGWKPGQWRVFQDRTRKQRRRKKCRSIKYGV*
back to top

mRNA from alignment at A-nodosum_M_contig942:4299..12648-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.1.1 ID=mRNA_A-nodosum_M_contig942.1.1|Name=mRNA_A-nodosum_M_contig942.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8350bp|location=Sequence derived from alignment at A-nodosum_M_contig942:4299..12648- (Ascophyllum nodosum dioecious)
ACGAGTACCAGCTTTGAAGGGCATGCCTGGAATATGCGGTTTCATTTCTG GAGACCTGGAAGGCCATGATCAATATTTTAGTAAATTATAGGAGAGCACA ACTGTACACTAGGTACAGTAGTATTTGGTATCTCTTTGAGAGAAGGTAGT ACGTGCTGCCGGAGATGACCTGACCAATATTATGGAAAACCACACATTTG TCCCTCGCGCACGTTAACTCAGACTGCTTCGACGCAGAAGGAGGTACGAA CTGCTTTATCACTCTGTGTTGCGTTTGTGCTCCGAGTTTCGTGAGTCGAG ATCGTTTCTGTGGCTCAATATCAAAAAAAGTATCCACGGCAAAAGTCAAG AATAAAAAAATGCGGCGAGATCAGGCACGTACCCCATTGCCTCGTGTATA TACTAGAATATCCCGACTTTGGTCGTCAAGAAGTTAGTCGTTAAGCCCGT CGTGCTATGCGACGAAGGTGTACACATATTTTCGGGGTATGTTTACGGTA GTGTGCGAAAGGTTCGTCGTGGGTACGAGCTTGTCCGCGACGAATCGTTA TCTTCGAATCCCTAAAAAATGACCATATGTAGGCTGAAATTACTCAACAC AGAACTGGTACTGGTGTAGTACACACAGACGTCTTTTTTCGAAAGATCTC TGGTCTCTTTTTTCGAAAGATTTCTAGTACATACAATGGTTACACCCACA CACATTTTGTGATGACGGACAGATAGATAGGTGTTACTACGACGAGAACG GCTATCGACTCAATCTCCACGTAGAACATTGTGCATAGTGTATTCTACGC CAATAGTCTCTCTGGATAGGTGCAGTGTGGACGGGTCCATGTCTTTCAAA ACTAGGTGTGGTGCTGTTTCCCGAGGACCACGCGTTGTACAGAGGTCGTG GGAAGGTGGGAAAATGACGCACCAACCAACGATAAGTTAGACTAACAAAA ACACACAAAGGGAGTTCGACCCTTACCTGGGAACCTGTGACTTCTCCGTG CCTCGGCGGTCCGGCCGGCTGTCGAGTGGCTCCAGTATACAATTGCTGCT GTACAGCCCAAGGATAATGGCGGGATACCATGTTGTTTTTTAAACTACCC CCGATCTGATCATCGCCTACAAACTATTGCAACCCGGCAGCACCTAGACG TGTACAAAACTAGTGAATAAGTTTCTGCGGTGAATCAGGCACACATCTTG TAGACGTGCTAGAGTGCTGTTACAGTCATACCCTTAGTATAAGTCGGTGA TCAACTCTACCCGTTCAAGGTTGCAGCCACCACGAAGCCCTGACGAAGTC AGCTTTTTTTATTTGCGGGACCAGGGGCTGCGCTGCACGTGAGGTCAAAA TCCTCCCGGCCTCAGGCTGAGGAGATCGTCGGTCATCAGTAATCTGTCGC CACGGCGATCAAGGGGCTCGTGGTTTCGGACCTCAGCCCCGCCAGCGGAG AGATCAAGTCTCGTCTTTCTTTCTACCCCGTCGAGGAACAGGTTCCCCGG AGGATTCTACGGCAGCTTCGATAAATTTTCGCTAGTTGGAAACAAAGATC AAAGAGACGACGATGCCAGCCCCCGCAGCAGAAGAGGCAGCAAGATGGGG GCTATGGCACCCAAGCCCGAGCTGAGTCAATTCCGCAGGATCGATGTGCT GCGGGGCGGGAGCAGCACTTGATGGCGAACAACGCTGTGGTCACATCCAC GTATAATGCAGTCACATTTATGCCCAGGTCCCTCTTCGAGCAGTTCAGGT GCATTGCCAACATCTACTTCTTGGTGATCAGCATCCTGATGGTTATCGGC ACCTACACGATGTCAGTATATAATATAACGGTGGGCTTCTCCCCGTCATT ATATTGTTGACCCAATGTCATTTCCATCGGAGAACCCGTTTAAAATGCCA TGAAGAGGTTTCGTATTTGCAGGTTTCGTATTTGCAGCCTTTTATCCCAC CTAAGGCCTTTCCCCCCCCTGACTAGGGGATGCTCAGAAGGTCTAGTTTC GTGCGGATTTTTTCTTTAAATACTATGTAGTGATTCTGTATTACAGCCTA CTACGTAGTAAGATATTATAACTACCATGTTTGATAGTGTATACTACATT GTTCCTGTTCTGTCTTTACTGGCTTTCTGGTGTCCCTGCATGGCGATTAA TGTAAGTAAACCGTATAACGGTGGGCTTCTCCTTGATATTTTACTGTTGA CCTAATGTTATTTCCATCGGGGTACCCGTTTGAATACCATGAAGAAGTTA TGTATTTGTAGCCTTTGATCCCACCTAAATGTTTTTTTATGTCCAGAAGG TCTAGGCGTGTTTTGATATGTACTACTTACGATATCATATCATTATTTCT ATGTTACTGCACTGTACTGTACTATATACTACTAAATTACTAGGCGGGGG CTGATCTTTCGTTAAATACGTATAGCAAAAGGTATTGCACAATTTTCCAG GATTACGTCTACATCTATACCTGAAAATCCCCTTCAGTGACACCCATCCG GTCCTAAATGTAATGTAACAAACTGAGTTGTAACCCAAGCTTCCCGTGTC TTCTGTGTTTATGCGATATCCTTGCATGGCAATTAATGATATTGTACAGT ATACTAGTTGATTTCTCCCCTACATTTTACTGTTTACCCAAGCCCCTACT ATTCTTGTATGGCTCGATGGTACTATTATCGGCATTAGTACTATCATCCT CGTAACTATGTACTACAGTACACGTGGCAAACATTTCTCTTTTCAGAAAA GAAATGGTATCACAGTGACCTGCCCTGGTCAAATTTCTTGTTCTGCTCGG CAGCCCAAGCTGTCGTCCCTTGCCGCTGCCGCATCTTCGTAAGTATCGCG AACTCCTCGCGAGCGGCGGCTTGTTGTGTAGTCTCGTCGTTGCTGCCGTC CATTCCGACTTCTGGTTGAACTTTATTCTCGTTTACCCCGACGTCTGATT GCAGCAAAATACACTCTTGCTCGGTGCTTGTGCAATTTGAATGCAAACAA TCATCCATACTGGTTTTAAAAGGAAACATTTCTTCCTCCTCCATTTGCGA CTCGGCTCGCGATACTCCGGGTCCTGGCCCCTTACCGATCGCGGGCGACC GTTTCGGCGTTCCGGGTTCCTCTGACCCCATATCGACCGCGGCGCGTCGC GGCGATGGATCGCACTGTGACGATGGGCTGTTCTCCCTGGCCCGATGTTC CCCTATCACATCATCGGGCTGCACTGAGGTTTCGGGTGCTGGACGCCGTA CGGTAAGAGGATAATTTGTATTCAGGATCATTTTGAGAGATGCCGGAAAT ATTCCCTTCCGTGCCTTGATCAGTCTACTCTGCAGATTATCAATATAGCT CGGCGGAGGGGTAGGCAAAAGCCTCGCCGGGTATTCTTCCTGCGGGCAAT TGAGGGCCTCGCAGTTGTGACATATTATCATCCAATTGACCTCTTCCAAG CACGCCTCGAGTTCGAGCTGCATGAAGGTTCTTATCCTTGCTTCACGCGT CCGCATCATTTTGTAGTACTCGTGCTCGTCAACAGTCGTCATTTTTGAAA ACCAGATAAAAAACGCAGTGCTCGCGTTCACCTGACCTGGAGTCTCCAAC GACCTCCAGTAAAATCCAGGCTCTCTCGGGTTCCCTGGTTGCGCACTCGT CGCGCTCCTTCGACCGGTGTCTCCTATAACACTGGCGCTCTCCTTGCAGC GCTCTCGGTCGGTTCCTCGACCGGTTGTACTAGACGTACAGTTCTCGCAC TCCTCCTGGTGCCGTAGACCGGGCCGGTGATGTTCCTGCTTTCGGCAGAT GGGTACAGACAGATCAGTACTGTAACCCGATTCCAGGCTCACCCCTCTGG GTTCTTGCACTGGACACGAGGTTCTTGCTCTCGTGCGGCCGGTGGTTCCT TACGCACTGGCGCTATCCTCAAAGCGCGCTCGACCGGTGGTGTCTCTGGC TCCTTGGCTGATCGGTGGTCAAACCCAAGCTCCTCGATACAGGGTTGTCC TTCGTCTCTTTCAAGCCCTGCTTTCCTTCACAAAGTTCGAGTGATTTCTA AAATTCCCATAATACACAAAACACGACTGTCTCCAATCGTTGCCCTCCTA AGCTCCAAAAACCATCGATTAATCATCCACTAGTGTAATGGAAGGTATCT GAGCTGGATGGGTCTCACACGGGAGAGGTGGTGCTATACTGGGGGTTAGA TGAGCAGGCTCGACGTGAACACATGCCAGACGAGTACAAAGACCGATATA TTATTCAGTGCTGCCGTAACCCACATCCCGGGTCTATCGGACAGACACGA GATCACCACATTGGTTCCCAACAAACTGAACTAAGAGGGTAAGCTCAGAC AGAACAAAGGATCTCCCAAATACGTATAGTAGATCGACTGCTGAAACTAC CGTGAATCCTATTGGTCAGAATATTCCAGTAATCTATCTACAATTAGAAG ATATAACGAACACAAAAGGTATTCATTTTATGAGTAATAGTTGTACAGTA GTAGTAAAGAGTACGAACAATTACAAGTACGGAGTACTCTTACATAAAAG TCATCCGCTTTGTGCCTTTATATCGTGTAGTGGGTGTGAGAAAGATGGTT TATGGTGACCTGCCAAGGGAGCACCCGTTTGGAACTACCTTGAGATTTAC TGGCCCTGTGCAGGTTCAGCGTATACTGTACATGATACATTACACATGAC ATCCCACCCCGTCAACGAAAGGACTTACTATTACAGGTATATAGCTAGTA CACTTTATACAGTATATTTTTTACAATATACTTTATACAGTATACTTTCT ACAATATACTTTCTACAAATACTTTCTACAATATACTTTATGCAGTACAC TTTATACAATAAACTTTATACAGTATAATTTATACAACATACTTTATACG GTATACTTTATGCAGTATTGTTTGTACAGCATACTTTGTACAGTATACTT TATAGAAAATAGTTTCAGATGCTTTCCGCTACGGAAACCAGCCCAAAGAA ATAGTTTTGCTGTACAACAGTAGTTTTTCTTCAAACAGTATGTATGTGTG TACCATGTATGTATCTATGTATCTATGTATCTATGTATGTATGTATCTAT GTAATTGTGTAAAGTTAGCACTTTCAGGAGAGTATGGATCAACCGGGTAT GGTTGCCAATCCTGCCCGTCGTCGGCTGAACAGGGAAAATGTTTTTTTCT CTGTCCCCGTTCGCGCTTCAGAATTTGGTCTCGCGAGACAGATTCGACCA TCCCGTCCCGCGTCAGCCTGCTCATTCTACACACTCGGGCTGAATCTGGT GCTTACTGAATTCTCCCCGCTTTCCGCGGCGGCGTCCACATATACCAACC GCCATCGGGTCAGTCCCGAGTTTATCGAGTCACGCAATGGCGTACCGATA GCGTTCACTGCCTAAAGTCCATTGGCACAGGGCTAGTAGTCCTCAAGACA GTTCCAGTAACGGGTGCTGGCTTTTCAGGGTTCACCTTGGACTAATTCCT TATGCGCCTCTCTCCTCCCACACCCATTAATCGTACATACGTAATTAACA GTGGACATGTGGAATACAAAAAGTATCGGAGGAGGTGCAACGGTATAAAG GTCGGTGGTATGTATAGTTGGAAGAGTTTCGAAAATATATACGGAGAGTA CATATATACTACCTGGTATAAATTTTGATGCAATGTGCAAAGCTTGTTGC CCTCTGGTTGTTTGGGTTCGTATCCTAACATTTCCAAACACCAGATGTCA TGAAGTCACGATTGCTTGTACACAGATTTGGCGTGTTTTAGATCTCAGAT GTGTAGAACTTGATGCTCTTCAAGCTCTGCGTCGATCCAAGCTTTAGTGT TTACGGCATCGGCCATGATCAATATCACTATCAATATTAACAGTAGCTTC GTGTCGGTGATCTACCCCCAGAAAATTTGTAAAATGACTTTCGGGGTTGT ACCGATCTACATTCCTCCAACAACACTACGCTTCGAGCACTTGCACAGGT ACTGCTATTCGGTAGAGAAGTTTTTTTTTTGGCTGTGGGGCTCGCGATAC CAAGTCTTCAAGGGTGTGTAGAGGCGGATGTGCCTGGTACAGGACAATCC CGCAGCGAGTCTCGCGACGGCGTGTGGCCGCCCCGGTGGTGATCCGTGTA GGATGGAACACCGTCAGACCATGTCATGTGCATTGAAGGCGACCCCAGGA TTCGTGTTTTCTTGAGCTGAAAATCTTCCAACGTTGAAAATGACAGATAA GCGAAAAATGCTTGGAAGGTTTAGATGCGTTTCAGATTTTTCTATAAAGC GCGAAACAGTTTGGAGTGGCCTGTTACAAAACTTCCCCGACGCCAAAGGC AAAGGGAAAGGGGGGATGAGATTGGATGAGATGTGCACAGGCTTTGTGTT GGAAGCTGGGGGAAGAACATGTTAGTTTGAAACGTTTGGGAGCTGTTTCG CCACCAAAGAGCAAAAATACTTCTTTTTTTAACCTTTAGAACAGGCATAT ATTTTATTACTGTACAACAAAAATAAAAATGCCCAACGGGTGGAGAACGA TTAAATCGTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGA ATGGCTGAATCCTTCGCGCGAGAAAAATTAAGGCACGCACCGCAGAAAGA AGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGG TACGTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACATACACA GAAAACACACACACACACAACTCTGTTGTGCACATTTCAGGTATCCGCCC AAGGTCGGATCGTTTGTCTACCTCTGTAAGTTACATTTCGCGCGCGCACC TTCCCACTTCTTCTGCTCGTACCCCGTTAGCTTTATCCACCACACAGACC CAACATTTTTCAGTCTATCTAAGAGATGCGCCCGGCGGATGTCTACCTGA TGTCCCGGTGCCCACAGGCGGCTAATGGGAGATCAAACCACGAGACAACT CTCGACGAAACGAGACCTGCTGCTGCCGCGGTCGTGGACCGTGCAAAGGA CAGCCTCAAAGCTGCTGCCCTTCACTGCATTGCCCTCGACGGATTAGGAG ATTTCCCAGCTGATCACAAGCTCGGTCTATTCGAGGTAGCCCCTGCAGAC GATACTCGGGCAATGACTCCCACAGAAGCGGCAGCAATGCCCCGAATCTC TGGAGCTCACGTGGTGTTCTCTGTGCAAAGGCAGGAGGTAGGACATCTCG ATTCACCATCGGCGCGAGGGGTCAACGTGACGGTGTTGTTGCAACTTTCT CTGAAAGGAGACAGGACGGAGCAAGGCCGAAGACCAGAATTTGCGCCACC AGGAATGCAGGATTACGAGGCCAATCGCATGAGCTCGAGAAGCTTGGAGG CAGTCTCTGACGCTGAAGCGCCAATCGGGGTGCCAGACAGGGAGGAAATG GGAGCGGCGGTGGCGGTGGCAGCAGTGGCTTCCGCGAGGGATCGCGCGGA AGTACAAGCAGCAATTTCTGTCCTAACATGTTGGAACATTTTGGCAGGTG CCGAGGAGGCGGGTGCATATATGGTGCACTTGGAGGTGGCCGCTGTATTT GGAAGTGGCGGAGATTGGTACACAGCCAACCAAAACATCGCTCTGACAAG AAACAGTTTCCAGGAAGCGTCTCATTCCTCCTCGCTGCCGTTATGGCCTT GGGCGACTCTGGCAAGCGGAAGCATCAACGACTTCAATGAGCAAGAAGCG ACGATTCTGGTGGGGAATCTGGAATGGTTACTAGAGGAGGATGTTCGCGA CAAGCTCGACGAGATCGCGGTAGCCGACGTGAAAGTATACCGCAGGGCAC ATGCTGAAGCGAATGGTGTTGAACCGTTCCAAGCGGGAAGGTCCGAGTCG CAGCTCCTGTGGCAGCAGCTGCTGCTTCAAGCGACGCTGTGTAAGCGTGA TTCTAGTGGCGTCGGTGTGGACAGTACGAGTGAGAAAGCATCCGCCAGCT TTCGAACGTCGTTGACGCCATACGCCGAGCAACGACCACAAGCCCGTCGC GGAGCCGCACCAGGAAGTAGGAGCAATGATAGCGGCGTACCAACTGCCAA AAGGATCTCCCCCAATCAGGCAGGAGGATCGGTAAACGCTCCGCCCTCTC AAAGTTGCGTTGTATCTGAAATGGAAGATGGAGAGTGGTGGAGAGAGCTG GACGAGCACGAGCGCGGCCGGGGTATGGCTGCAGTCAACGCCCTCCCCCG ACACCCTGGTTGGAAACCTGGCCAATGGCGGGTATTTCAAGACCGTACGA GGAAACAGCGCCGACGCAAAAAGTGCAGGTCTATCAAGTACGGAGTCTAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig942:4299..12648-

>mRNA_A-nodosum_M_contig942.1.1 ID=mRNA_A-nodosum_M_contig942.1.1|Name=mRNA_A-nodosum_M_contig942.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at A-nodosum_M_contig942:4299..12648- (Ascophyllum nodosum dioecious)
ATGACTCCCACAGAAGCGGCAGCAATGCCCCGAATCTCTGGAGCTCACGT
GGTGTTCTCTGTGCAAAGGCAGGAGGTAGGACATCTCGATTCACCATCGG
CGCGAGGGGTCAACGTGACGGTGTTGTTGCAACTTTCTCTGAAAGGAGAC
AGGACGGAGCAAGGCCGAAGACCAGAATTTGCGCCACCAGGAATGCAGGA
TTACGAGGCCAATCGCATGAGCTCGAGAAGCTTGGAGGCAGTCTCTGACG
CTGAAGCGCCAATCGGGGTGCCAGACAGGGAGGAAATGGGAGCGGCGGTG
GCGGTGGCAGCAGTGGCTTCCGCGAGGGATCGCGCGGAAGTACAAGCAGC
AATTTCTGTCCTAACATGTTGGAACATTTTGGCAGGTGCCGAGGAGGCGG
GTGCATATATGGTGCACTTGGAGGTGGCCGCTGTATTTGGAAGTGGCGGA
GATTGGTACACAGCCAACCAAAACATCGCTCTGACAAGAAACAGTTTCCA
GGAAGCGTCTCATTCCTCCTCGCTGCCGTTATGGCCTTGGGCGACTCTGG
CAAGCGGAAGCATCAACGACTTCAATGAGCAAGAAGCGACGATTCTGGTG
GGGAATCTGGAATGGTTACTAGAGGAGGATGTTCGCGACAAGCTCGACGA
GATCGCGGTAGCCGACGTGAAAGTATACCGCAGGGCACATGCTGAAGCGA
ATGGTGTTGAACCGTTCCAAGCGGGAAGGTCCGAGTCGCAGCTCCTGTGG
CAGCAGCTGCTGCTTCAAGCGACGCTGTGTAAGCGTGATTCTAGTGGCGT
CGGTGTGGACAGTACGAGTGAGAAAGCATCCGCCAGCTTTCGAACGTCGT
TGACGCCATACGCCGAGCAACGACCACAAGCCCGTCGCGGAGCCGCACCA
GGAAGTAGGAGCAATGATAGCGGCGTACCAACTGCCAAAAGGATCTCCCC
CAATCAGGCAGGAGGATCGGTAAACGCTCCGCCCTCTCAAAGTTGCGTTG
TATCTGAAATGGAAGATGGAGAGTGGTGGAGAGAGCTGGACGAGCACGAG
CGCGGCCGGGGTATGGCTGCAGTCAACGCCCTCCCCCGACACCCTGGTTG
GAAACCTGGCCAATGGCGGGTATTTCAAGACCGTACGAGGAAACAGCGCC
GACGCAAAAAGTGCAGGTCTATCAAGTACGGAGTCTAG
back to top