prot_A-nodosum_M_contig939.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig939.1.1
Unique Nameprot_A-nodosum_M_contig939.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length111
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A2R4QQ75_9PHAE (Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ75_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 8.610e-68
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRF NDKIRRLCLMSSYRGLR KKGLP RGQRTHTNAK
Sbjct:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLPARGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: D0IPU7_SACAN (Ribosomal protein S13 n=45 Tax=Laminariales TaxID=2886 RepID=D0IPU7_SACAN)

HSP 1 Score: 170 bits (431), Expect = 7.530e-53
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MPFIIGTPIPEDK+LVQS+S IYGIGLSQSKILC+KAGFG D RG +V+F +G+ L NLAE T L LG+DLRRF+NDKIRRLC++S+YRGLR +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTPIPEDKVLVQSISHIYGIGLSQSKILCKKAGFGSDSRGSHVTFLKGRNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A8F0FDF8_9PHAE (Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDF8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.530e-53
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MPFIIGT IPEDKILVQSVS IYG+GLSQSK+LC+KAGFG D RG +V+FS+G+IL NLAE T L LG+DLRRF+NDKIRRLC++SSYRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKILVQSVSHIYGLGLSQSKVLCKKAGFGSDSRGSHVTFSKGRILENLAEATPLPLGADLRRFQNDKIRRLCVLSSYRGSRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A7U1G3I7_9PHAE (Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2886 RepID=A0A7U1G3I7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.070e-52
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MPFIIGT IPEDK+LVQSVS IYGIGLSQSKILC+KAGFG D RG +V+F++GK L NLAE T L LG+DLRRF+NDKIRRLC++S+YRGLR +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKVLVQSVSHIYGIGLSQSKILCKKAGFGSDSRGSHVTFTKGKNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A0U1XCC6_SCYLO (Ribosomal protein S13 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCC6_SCYLO)

HSP 1 Score: 170 bits (430), Expect = 1.140e-52
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MP+IIGTPIPE+K+LVQS+S IYGIGL QSKILC+KAGFG D RGK+VSF +GKIL NLAE TSL LG+DLRRF+NDKIRRLC +S+YRG R +KGLPVRGQRTHTN+K
Sbjct:    1 MPYIIGTPIPEEKVLVQSLSHIYGIGLYQSKILCKKAGFGSDSRGKDVSFPKGKILENLAEGTSLPLGADLRRFQNDKIRRLCALSTYRGSRHRKGLPVRGQRTHTNSK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A8F0FC85_9PHAE (Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC85_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.060e-52
Identity = 84/109 (77.06%), Postives = 99/109 (90.83%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MPFIIGT IPEDK+LVQS++ IYGIGLSQSKILC+KAGFG D RG +V+FS+GK L NLAE+T L LG+DLRRF+NDKIRRLC++S+YRG+R +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKVLVQSIAHIYGIGLSQSKILCKKAGFGSDSRGIHVTFSKGKNLENLAEDTPLALGADLRRFQNDKIRRLCVLSAYRGVRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: Q2TUF4_9PHAE (Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.780e-52
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MPFIIGT IPEDK+LVQSV+ IYGIGLSQSKILC+KAGFG D RG+NV+FS+GK L NLAE   L LG DLRRF+NDKIRRLCL+S+YRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKVLVQSVAHIYGIGLSQSKILCKKAGFGSDSRGRNVTFSKGKNLENLAEAIPLPLGPDLRRFQNDKIRRLCLISTYRGSRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A0U1XDT6_9PHAE (Ribosomal protein S13 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XDT6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.400e-50
Identity = 80/109 (73.39%), Postives = 97/109 (88.99%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MP+IIGT IPEDK+LVQS++ IYG+GLSQSK LC+KAGFG D RG++VSF +GK++ NLAE T L LG+DLRRF+NDKIRRLC++S+YRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPYIIGTSIPEDKVLVQSIAHIYGLGLSQSKNLCKKAGFGSDSRGRDVSFFKGKMIENLAEATPLPLGADLRRFQNDKIRRLCVLSTYRGSRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: E6ZES0_ECTSI (Ribosomal protein S13 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.690e-49
Identity = 82/109 (75.23%), Postives = 95/109 (87.16%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MP+IIGT IPEDK+LVQS+S IYG+G SQSK LC+KAGFG D RG +++F +GKIL N AE TSL LGSDLRRF+N+KIRRLC +S+YRGLR KKGLPVRGQRTHTNAK
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHIYGLGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGSDLRRFQNNKIRRLCSISTYRGLRHKKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: Q94Z03_PYLLI (Ribosomal protein S13 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z03_PYLLI)

HSP 1 Score: 159 bits (403), Expect = 1.390e-48
Identity = 78/109 (71.56%), Postives = 95/109 (87.16%), Query Frame = 0 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 109
            MP+I+GT IPEDK+LVQSV  IYG+GL+QS  LC+KAGFG D RG+++SFS+GK+LGNLAE T L LG+DLRRF +DKI+RLC +S+YRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPYIVGTSIPEDKVLVQSVGHIYGLGLTQSISLCKKAGFGSDSRGRHISFSKGKLLGNLAEATPLPLGADLRRFTHDKIKRLCSLSTYRGSRHRKGLPVRGQRTHTNAK 109
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ75_9PHAE8.610e-6897.25Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 Rep... [more]
D0IPU7_SACAN7.530e-5377.98Ribosomal protein S13 n=45 Tax=Laminariales TaxID=... [more]
A0A8F0FDF8_9PHAE7.530e-5378.90Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii ... [more]
A0A7U1G3I7_9PHAE1.070e-5278.90Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2... [more]
A0A0U1XCC6_SCYLO1.140e-5277.98Ribosomal protein S13 n=1 Tax=Scytosiphon lomentar... [more]
A0A8F0FC85_9PHAE3.060e-5277.06Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxI... [more]
Q2TUF4_9PHAE8.780e-5278.90Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31... [more]
A0A0U1XDT6_9PHAE8.400e-5073.39Ribosomal protein S13 n=2 Tax=Scytosiphonaceae Tax... [more]
E6ZES0_ECTSI1.690e-4975.23Ribosomal protein S13 n=2 Tax=Ectocarpus siliculos... [more]
Q94Z03_PYLLI1.390e-4871.56Ribosomal protein S13 n=1 Tax=Pylaiella littoralis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 1..72
e-value: 1.0E-10
score: 43.6
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 3..110
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 73..110
e-value: 1.7E-14
score: 55.0
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 1..110
e-value: 2.1E-30
score: 103.3
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 4..109
e-value: 1.7E-17
score: 64.0
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 4..109
score: 26.267344
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 3..110
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 3..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig939contigA-nodosum_M_contig939:25927..26259 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig939.1.1mRNA_A-nodosum_M_contig939.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig939 25927..26259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig939.1.1 ID=prot_A-nodosum_M_contig939.1.1|Name=mRNA_A-nodosum_M_contig939.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSF
SQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVR
GQRTHTNAKIC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR02743730s_Rbsml_prot_S13_C
IPR001892Ribosomal_S13
IPR019980Ribosomal_S13_bac-type
IPR010979Ribosomal_S13-like_H2TH