mRNA_A-nodosum_M_contig939.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig939.1.1
Unique NamemRNA_A-nodosum_M_contig939.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A2R4QQ75_9PHAE (Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ75_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 8.610e-68
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRF NDKIRRLCLMSSYRGLR KKGLP RGQRTHTNAK
Sbjct:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLPARGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: D0IPU7_SACAN (Ribosomal protein S13 n=45 Tax=Laminariales TaxID=2886 RepID=D0IPU7_SACAN)

HSP 1 Score: 170 bits (431), Expect = 7.530e-53
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MPFIIGTPIPEDK+LVQS+S IYGIGLSQSKILC+KAGFG D RG +V+F +G+ L NLAE T L LG+DLRRF+NDKIRRLC++S+YRGLR +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTPIPEDKVLVQSISHIYGIGLSQSKILCKKAGFGSDSRGSHVTFLKGRNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A8F0FDF8_9PHAE (Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDF8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.530e-53
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MPFIIGT IPEDKILVQSVS IYG+GLSQSK+LC+KAGFG D RG +V+FS+G+IL NLAE T L LG+DLRRF+NDKIRRLC++SSYRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKILVQSVSHIYGLGLSQSKVLCKKAGFGSDSRGSHVTFSKGRILENLAEATPLPLGADLRRFQNDKIRRLCVLSSYRGSRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A7U1G3I7_9PHAE (Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2886 RepID=A0A7U1G3I7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.070e-52
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MPFIIGT IPEDK+LVQSVS IYGIGLSQSKILC+KAGFG D RG +V+F++GK L NLAE T L LG+DLRRF+NDKIRRLC++S+YRGLR +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKVLVQSVSHIYGIGLSQSKILCKKAGFGSDSRGSHVTFTKGKNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A0U1XCC6_SCYLO (Ribosomal protein S13 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCC6_SCYLO)

HSP 1 Score: 170 bits (430), Expect = 1.140e-52
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MP+IIGTPIPE+K+LVQS+S IYGIGL QSKILC+KAGFG D RGK+VSF +GKIL NLAE TSL LG+DLRRF+NDKIRRLC +S+YRG R +KGLPVRGQRTHTN+K
Sbjct:    1 MPYIIGTPIPEEKVLVQSLSHIYGIGLYQSKILCKKAGFGSDSRGKDVSFPKGKILENLAEGTSLPLGADLRRFQNDKIRRLCALSTYRGSRHRKGLPVRGQRTHTNSK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A8F0FC85_9PHAE (Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC85_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.060e-52
Identity = 84/109 (77.06%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MPFIIGT IPEDK+LVQS++ IYGIGLSQSKILC+KAGFG D RG +V+FS+GK L NLAE+T L LG+DLRRF+NDKIRRLC++S+YRG+R +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKVLVQSIAHIYGIGLSQSKILCKKAGFGSDSRGIHVTFSKGKNLENLAEDTPLALGADLRRFQNDKIRRLCVLSAYRGVRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: Q2TUF4_9PHAE (Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.780e-52
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MPFIIGT IPEDK+LVQSV+ IYGIGLSQSKILC+KAGFG D RG+NV+FS+GK L NLAE   L LG DLRRF+NDKIRRLCL+S+YRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPFIIGTSIPEDKVLVQSVAHIYGIGLSQSKILCKKAGFGSDSRGRNVTFSKGKNLENLAEAIPLPLGPDLRRFQNDKIRRLCLISTYRGSRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: A0A0U1XDT6_9PHAE (Ribosomal protein S13 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XDT6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.400e-50
Identity = 80/109 (73.39%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MP+IIGT IPEDK+LVQS++ IYG+GLSQSK LC+KAGFG D RG++VSF +GK++ NLAE T L LG+DLRRF+NDKIRRLC++S+YRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPYIIGTSIPEDKVLVQSIAHIYGLGLSQSKNLCKKAGFGSDSRGRDVSFFKGKMIENLAEATPLPLGADLRRFQNDKIRRLCVLSTYRGSRHRKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: E6ZES0_ECTSI (Ribosomal protein S13 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.690e-49
Identity = 82/109 (75.23%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MP+IIGT IPEDK+LVQS+S IYG+G SQSK LC+KAGFG D RG +++F +GKIL N AE TSL LGSDLRRF+N+KIRRLC +S+YRGLR KKGLPVRGQRTHTNAK
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHIYGLGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGSDLRRFQNNKIRRLCSISTYRGLRHKKGLPVRGQRTHTNAK 109
[Close]
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Match: Q94Z03_PYLLI (Ribosomal protein S13 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z03_PYLLI)

HSP 1 Score: 159 bits (403), Expect = 1.390e-48
Identity = 78/109 (71.56%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVRGQRTHTNAK 327
            MP+I+GT IPEDK+LVQSV  IYG+GL+QS  LC+KAGFG D RG+++SFS+GK+LGNLAE T L LG+DLRRF +DKI+RLC +S+YRG R +KGLPVRGQRTHTNAK
Sbjct:    1 MPYIVGTSIPEDKVLVQSVGHIYGLGLTQSISLCKKAGFGSDSRGRHISFSKGKLLGNLAEATPLPLGADLRRFTHDKIKRLCSLSTYRGSRHRKGLPVRGQRTHTNAK 109
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ75_9PHAE8.610e-6897.25Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 Rep... [more]
D0IPU7_SACAN7.530e-5377.98Ribosomal protein S13 n=45 Tax=Laminariales TaxID=... [more]
A0A8F0FDF8_9PHAE7.530e-5378.90Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii ... [more]
A0A7U1G3I7_9PHAE1.070e-5278.90Ribosomal protein S13 n=8 Tax=Laminariales TaxID=2... [more]
A0A0U1XCC6_SCYLO1.140e-5277.98Ribosomal protein S13 n=1 Tax=Scytosiphon lomentar... [more]
A0A8F0FC85_9PHAE3.060e-5277.06Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxI... [more]
Q2TUF4_9PHAE8.780e-5278.90Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31... [more]
A0A0U1XDT6_9PHAE8.400e-5073.39Ribosomal protein S13 n=2 Tax=Scytosiphonaceae Tax... [more]
E6ZES0_ECTSI1.690e-4975.23Ribosomal protein S13 n=2 Tax=Ectocarpus siliculos... [more]
Q94Z03_PYLLI1.390e-4871.56Ribosomal protein S13 n=1 Tax=Pylaiella littoralis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig939contigA-nodosum_M_contig939:25927..26259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog382464.ABSI01000011_gene2650
Preferred namerpsM
PFAMsRibosomal_S13
Model size333
Max annot lvl203494|Verrucomicrobiae
KEGG koko:K02952
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-17
EggNOG OGsCOG0099@1|root,COG0099@2|Bacteria,46VYP@74201|Verrucomicrobia,2IUGG@203494|Verrucomicrobiae
DescriptionLocated at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Cds size333
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.3624878-CDS-A-nodosum_M_contig939:25926..262591680870426.3624878-CDS-A-nodosum_M_contig939:25926..26259Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig939 25927..26259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig939.1.1prot_A-nodosum_M_contig939.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig939 25927..26259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig939.1.1

>prot_A-nodosum_M_contig939.1.1 ID=prot_A-nodosum_M_contig939.1.1|Name=mRNA_A-nodosum_M_contig939.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSF
SQGKILGNLAENTSLFLGSDLRRFRNDKIRRLCLMSSYRGLRQKKGLPVR
GQRTHTNAKIC
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mRNA from alignment at A-nodosum_M_contig939:25927..26259-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig939.1.1 ID=mRNA_A-nodosum_M_contig939.1.1|Name=mRNA_A-nodosum_M_contig939.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig939:25927..26259- (Ascophyllum nodosum dioecious)
ATGCCTTTTATTATCGGTACCCCCATTCCAGAAGATAAAATTTTGGTGCA
GTCTGTTTCACAAATTTATGGTATTGGTTTATCGCAATCTAAAATTTTAT
GTAGAAAAGCAGGATTCGGTCAGGATTGTCGAGGTAAAAACGTTAGTTTT
TCTCAAGGTAAGATCCTAGGGAATTTGGCAGAAAATACATCTTTATTTTT
AGGGTCAGATCTCCGTCGGTTTCGCAATGACAAAATTCGTCGATTATGTC
TAATGTCGTCGTATCGAGGTTTACGCCAGAAAAAAGGTTTGCCTGTCAGA
GGTCAGCGTACGCACACCAATGCAAAAATTTGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig939:25927..26259-

>mRNA_A-nodosum_M_contig939.1.1 ID=mRNA_A-nodosum_M_contig939.1.1|Name=mRNA_A-nodosum_M_contig939.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig939:25927..26259- (Ascophyllum nodosum dioecious)
ATGCCTTTTATTATCGGTACCCCCATTCCAGAAGATAAAATTTTGGTGCA
GTCTGTTTCACAAATTTATGGTATTGGTTTATCGCAATCTAAAATTTTAT
GTAGAAAAGCAGGATTCGGTCAGGATTGTCGAGGTAAAAACGTTAGTTTT
TCTCAAGGTAAGATCCTAGGGAATTTGGCAGAAAATACATCTTTATTTTT
AGGGTCAGATCTCCGTCGGTTTCGCAATGACAAAATTCGTCGATTATGTC
TAATGTCGTCGTATCGAGGTTTACGCCAGAAAAAAGGTTTGCCTGTCAGA
GGTCAGCGTACGCACACCAATGCAAAAATTTGT
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