prot_A-nodosum_M_contig93.51.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig93.51.2
Unique Nameprot_A-nodosum_M_contig93.51.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length851
Homology
BLAST of mRNA_A-nodosum_M_contig93.51.2 vs. uniprot
Match: D7G5P7_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P7_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 7.150e-32
Identity = 142/411 (34.55%), Postives = 202/411 (49.15%), Query Frame = 0
Query:  391 VPTSSTMTASVQLNGVTGRDEETLKVNLMEGFTAALSLNS---AMNVTIAIEQFS---PETSASVRIRGRRSLQQETCSMST-ETCTVTATATVAF------EAGDSSARGVESLSVKENFEMIAESADVDASDVTLSELKVSADPNEPVSNDDSVD-LVGQTTSSSXXXXXENYWLXXXXXXXXXXXXXCCLCWAYLRYSNAKEEISADQARRSASSTGRWGGDSYGD--PPSPSKGVDSIERAKMDTLIMDQKRKEKTKSMGGNDSQVGLRTSLEDIPEESGSSAGDPNFKDNRSSRVNMISRNSVGRSSWEEXXXXXXXXXXWEASRRSFREGGAVPSGRQVLSRGKQRSTGSSSFSDELAAQRGPEARRASGGSRRNTFSSAGESSTSNEVDQRTSNTSNTSGGVSG 785
            VP S+TMTAS++L GV GR EE L+ +L EG   A+S +       V ++I+  S    E++   R+RGRR LQ+  C +   +TCTV ATATV +      ++G SSARGV+S+S KEN + IA +A V+ SD+TL  L VSAD ++ V +    D +VGQT  SS      NYWL             CCLCWA+ RY+ +++E   D     +++  RW GD + D  P    +GV S +R ++DT ++     E   S  G                                S    +   S+  +                A+  +   G    SGRQ+LSRG+Q+STGSSSFSDEL    G  A     G RR++ + + +  TS+  D R   +S  S G+SG
Sbjct:  724 VPVSATMTASLELAGVFGRTEEELQADLEEGMAEAISDSDDSVPRTVNVSIDDLSVPNDESTRRTRVRGRRRLQETECVLENGDTCTVKATATVVYSSGAEDDSGGSSARGVDSISNKENLQKIASAAGVEGSDLTLGSLIVSADESDQVLDSSETDGVVGQTIVSSDGADASNYWLFILAAALLLLLWLCCLCWAWQRYNMSQDE--QDDTYDDSTTGARWAGDKHRDSSPTFKGRGVASSDR-QLDTAVV-----EDIISQQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEGGVGDQSLSSA----------------AAAGAGATGKVKASGRQILSRGQQKSTGSSSFSDELVGPLGDPA-----GGRRSSHNQSSDHYTSD--DTRQFGSSGMSSGISG 1103          
BLAST of mRNA_A-nodosum_M_contig93.51.2 vs. uniprot
Match: A0A6H5KFS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.020e-28
Identity = 101/250 (40.40%), Postives = 142/250 (56.80%), Query Frame = 0
Query:  392 PTSSTMTASVQLNGVTGRDEETLKVNLMEGFTAALSLNS---AMNVTIAIEQFSPETSASVR---IRGRRSLQQETCSMST-ETCTVTATATVAF------EAGDSSARGVESLSVKENFEMIAESADVDASDVTLSELKVSADPNEPVSNDDSVD-LVGQTTSSSXXXXXENYWLXXXXXXXXXXXXXCCLCWAYLRYSNAKEEISADQARRSASSTGRWGGDSYGDP-PSPSKGVDSIERAKMDTLIM 626
            P S+TMTAS++L GV GR EE L+ +L EG   A+S +       V ++I+  S  T  S R   +RGRR LQ+  C +   +TCTV ATATV +      ++G SSARGV+S+S KEN + IA +A V+ SD+TL  L VSAD +  V +    D +VGQ   SS      NYWL         XX  CCLCWA+ RY+ +++E   D     +++  RW GD + D  P   +GV S  + ++DT ++
Sbjct:  487 PVSATMTASLELAGVFGRTEEELQADLEEGMAEAISDSDDGVPRTVNVSIDDLSVPTDESTRRTRVRGRRRLQETECVLEDGDTCTVKATATVVYSSGADDDSGGSSARGVDSISNKENLQKIALAAGVEGSDLTLGSLIVSADESNQVLDSSETDGVVGQNIVSSDGADASNYWLFILAAALLLXXWLCCLCWAWQRYNKSQDE--QDDTHDDSTTGARWAGDKHRDSSPYKGRGVASSNQ-QLDTAVV 733          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.51.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5P7_ECTSI7.150e-3234.55Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5KFS6_9PHAE3.020e-2840.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 662..683
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 809..824
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 596..850
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 615..637
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 751..808
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 525..541
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 720..737
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 516..541

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig93contigA-nodosum_M_contig93:633317..640444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig93.51.2mRNA_A-nodosum_M_contig93.51.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig93 631215..642378 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig93.51.2 ID=prot_A-nodosum_M_contig93.51.2|Name=mRNA_A-nodosum_M_contig93.51.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=851bp
MRGLGQPCRACADNCDGGGLDVCVACDEVQTPAPSITTPAPSQPPETLAP
SDMVPTPVPSDITPTVVPTATETPVVTPTPVVTIAPTETAAPVATTTASS
ITTPAPSQPPETLAPAEMVPTPVPSEIAPTGVPSATDTPVVTPTPVVTVA
PAETAAPVATPAPQFILPPQLSLPPGFTLPPGFTLPPGFTFPPGFTLPPD
FTLPPDFTLPPEISLPPAFLPTESTLAPGVTTAPGATMAPADTTAPEATM
ALTNAPTTEIIPTAPSMGPTRFPSVAPMVSPTAIPTSVPTRSPTAVPTAV
PTISPTAVPTVVPTGSPTAVPTAVPTGSPTAVPTAVPTDLPQLYRLQSQR
HLHSGTDRSPNGISHSGTDCSPNGISDSGTDCSSNGSPTAVPTSSTMTAS
VQLNGVTGRDEETLKVNLMEGFTAALSLNSAMNVTIAIEQFSPETSASVR
IRGRRSLQQETCSMSTETCTVTATATVAFEAGDSSARGVESLSVKENFEM
IAESADVDASDVTLSELKVSADPNEPVSNDDSVDLVGQTTSSSSSPSSEN
YWLFILALALLLMLWLCCLCWAYLRYSNAKEEISADQARRSASSTGRWGG
DSYGDPPSPSKGVDSIERAKMDTLIMDQKRKEKTKSMGGNDSQVGLRTSL
EDIPEESGSSAGDPNFKDNRSSRVNMISRNSVGRSSWEEEEDDDDDDDDW
EASRRSFREGGAVPSGRQVLSRGKQRSTGSSSFSDELAAQRGPEARRASG
GSRRNTFSSAGESSTSNEVDQRTSNTSNTSGGVSGSGSGSGGISSSFTSS
AGVTSSTVEDDRENNDDQGSSDYDSVSKDDATSSVPEHGAGAPERAPETS
*
back to top