prot_A-nodosum_M_contig928.16.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig928.16.1
Unique Nameprot_A-nodosum_M_contig928.16.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length111
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig928.16.1 vs. uniprot
Match: A0A6A4ZAH6_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAH6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.520e-6
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 0 
Query:    1 LWLESLLWASECYNRAATSVSDERLSPHEIFYGSRPRLPLLSYLQP----AYHRVPRQRKT---DPRARMCYFLNFGCNRGRDCYRLLDAETGRVAYSRDVTWHHPEAPWITLIRAA 110
            LW E++++++  YN + +S +D +   H +F     R P L+Y+      A+  + +  +T   D RA  C F+  G    R  Y+LL+A + ++ YSRDV +H  E P I  I+AA
Sbjct:  704 LWAEAVIYSAWLYNISPSSSNDGQSPYHRVFS----RHPPLAYIHTFGCTAFVHIQKANQTNKLDARAIKCMFV--GLPDDRKGYKLLNAYSHQLLYSRDVVFHEDEFPPINTIQAA 814
[Close]
BLAST of mRNA_A-nodosum_M_contig928.16.1 vs. uniprot
Match: A0A6A4ZCE2_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZCE2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.610e-6
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 0 
Query:    1 LWLESLLWASECYNRAATSVSDERLSPHEIFYGSRPRLPLLSYLQP----AYHRVPRQRKT---DPRARMCYFLNFGCNRGRDCYRLLDAETGRVAYSRDVTWHHPEAPWITLIRAA 110
            LW E++++++  YN + ++ +D +   H +F     R P L+Y++     A+  + +  +T   D RA  C F+  G    R  Y+LL+A + ++ YSRDV +H  E P I  I+AA
Sbjct:  179 LWAEAVIYSAWLYNISPSTSNDGQSPYHRVFS----RHPPLAYIRTFGCTAFVHIQKANQTNKLDARAIKCMFV--GLPDDRKGYKLLNAYSHQLLYSRDVVFHEDEFPPINTIQAA 289
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig928.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A4ZAH6_9STRA3.520e-632.48Integrase catalytic domain-containing protein (Fra... [more]
A0A6A4ZCE2_9STRA6.610e-631.62Integrase catalytic domain-containing protein (Fra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig928contigA-nodosum_M_contig928:247004..247336 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig928.16.1mRNA_A-nodosum_M_contig928.16.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig928 247004..247336 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig928.16.1 ID=prot_A-nodosum_M_contig928.16.1|Name=mRNA_A-nodosum_M_contig928.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
LWLESLLWASECYNRAATSVSDERLSPHEIFYGSRPRLPLLSYLQPAYHR
VPRQRKTDPRARMCYFLNFGCNRGRDCYRLLDAETGRVAYSRDVTWHHPE
APWITLIRAAP
back to top