mRNA_A-nodosum_M_contig928.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig928.16.1
Unique NamemRNA_A-nodosum_M_contig928.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig928.16.1 vs. uniprot
Match: A0A6A4ZAH6_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAH6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.520e-6
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 1 
Query:    1 LWLESLLWASECYNRAATSVSDERLSPHEIFYGSRPRLPLLSYLQP----AYHRVPRQRKT---DPRARMCYFLNFGCNRGRDCYRLLDAETGRVAYSRDVTWHHPEAPWITLIRAA 330
            LW E++++++  YN + +S +D +   H +F     R P L+Y+      A+  + +  +T   D RA  C F+  G    R  Y+LL+A + ++ YSRDV +H  E P I  I+AA
Sbjct:  704 LWAEAVIYSAWLYNISPSSSNDGQSPYHRVFS----RHPPLAYIHTFGCTAFVHIQKANQTNKLDARAIKCMFV--GLPDDRKGYKLLNAYSHQLLYSRDVVFHEDEFPPINTIQAA 814
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BLAST of mRNA_A-nodosum_M_contig928.16.1 vs. uniprot
Match: A0A6A4ZCE2_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZCE2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.610e-6
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 1 
Query:    1 LWLESLLWASECYNRAATSVSDERLSPHEIFYGSRPRLPLLSYLQP----AYHRVPRQRKT---DPRARMCYFLNFGCNRGRDCYRLLDAETGRVAYSRDVTWHHPEAPWITLIRAA 330
            LW E++++++  YN + ++ +D +   H +F     R P L+Y++     A+  + +  +T   D RA  C F+  G    R  Y+LL+A + ++ YSRDV +H  E P I  I+AA
Sbjct:  179 LWAEAVIYSAWLYNISPSTSNDGQSPYHRVFS----RHPPLAYIRTFGCTAFVHIQKANQTNKLDARAIKCMFV--GLPDDRKGYKLLNAYSHQLLYSRDVVFHEDEFPPINTIQAA 289
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig928.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A4ZAH6_9STRA3.520e-632.48Integrase catalytic domain-containing protein (Fra... [more]
A0A6A4ZCE2_9STRA6.610e-631.62Integrase catalytic domain-containing protein (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig928contigA-nodosum_M_contig928:247004..247336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size333
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000159
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size333
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.9875073-CDS-A-nodosum_M_contig928:247003..2473361680870400.9875073-CDS-A-nodosum_M_contig928:247003..247336Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig928 247004..247336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig928.16.1prot_A-nodosum_M_contig928.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig928 247004..247336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig928.16.1

>prot_A-nodosum_M_contig928.16.1 ID=prot_A-nodosum_M_contig928.16.1|Name=mRNA_A-nodosum_M_contig928.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=111bp
LWLESLLWASECYNRAATSVSDERLSPHEIFYGSRPRLPLLSYLQPAYHR
VPRQRKTDPRARMCYFLNFGCNRGRDCYRLLDAETGRVAYSRDVTWHHPE
APWITLIRAAP
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mRNA from alignment at A-nodosum_M_contig928:247004..247336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig928.16.1 ID=mRNA_A-nodosum_M_contig928.16.1|Name=mRNA_A-nodosum_M_contig928.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig928:247004..247336+ (Ascophyllum nodosum dioecious)
CTCTGGCTGGAGTCGCTACTCTGGGCATCGGAGTGCTACAACAGGGCGGC
AACATCAGTGAGCGACGAACGGCTTTCCCCCCATGAGATTTTCTACGGGA
GCCGCCCACGGTTGCCACTGCTATCCTACCTCCAACCCGCCTATCACCGT
GTGCCGCGACAGCGGAAGACGGACCCCCGGGCCCGTATGTGTTATTTCCT
AAATTTTGGGTGTAATCGCGGGCGGGATTGCTACCGGCTCCTGGATGCGG
AGACGGGGAGAGTCGCATATTCACGCGACGTCACCTGGCACCACCCGGAA
GCACCGTGGATCACCCTGATCCGGGCCGCGCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig928:247004..247336+

>mRNA_A-nodosum_M_contig928.16.1 ID=mRNA_A-nodosum_M_contig928.16.1|Name=mRNA_A-nodosum_M_contig928.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=333bp|location=Sequence derived from alignment at A-nodosum_M_contig928:247004..247336+ (Ascophyllum nodosum dioecious)
CTCTGGCTGGAGTCGCTACTCTGGGCATCGGAGTGCTACAACAGGGCGGC
AACATCAGTGAGCGACGAACGGCTTTCCCCCCATGAGATTTTCTACGGGA
GCCGCCCACGGTTGCCACTGCTATCCTACCTCCAACCCGCCTATCACCGT
GTGCCGCGACAGCGGAAGACGGACCCCCGGGCCCGTATGTGTTATTTCCT
AAATTTTGGGTGTAATCGCGGGCGGGATTGCTACCGGCTCCTGGATGCGG
AGACGGGGAGAGTCGCATATTCACGCGACGTCACCTGGCACCACCCGGAA
GCACCGTGGATCACCCTGATCCGGGCCGCGCCA
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