prot_A-nodosum_M_contig9275.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9275.2.1
Unique Nameprot_A-nodosum_M_contig9275.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length246
Homology
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: D8LQZ5_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ5_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 2.720e-112
Identity = 182/232 (78.45%), Postives = 198/232 (85.34%), Query Frame = 0
Query:    1 MLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVA----SNEEGPRAALGATWEVVPSIRLVLSDASEEE--ASXXXXXXXXXXXXXGAVTARTATVLKHPAQA 226
            MLHHV+EVVGRSSSGKTQLCLTAAVAAASHGIGVLY+DTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRV+RAFDI+ VMSAL +Y+DGV EGG +GVYSDCRLVILDSVTAV+SPLLGG KNP GHGLMA+LGHLLNRAASQCSACVLVAN+TVA    S EEGPRAALG TWE VPSIR++L++AS     AS             G  + RTAT+LKHPAQA
Sbjct:  175 MLHHVVEVVGRSSSGKTQLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVVRAFDISRVMSALVAYIDGVMEGGRNGVYSDCRLVILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVANSTVAPRGISEEEGPRAALGLTWEGVPSIRVLLAEASAAAGGASGSGDAGGADHGTVGEASPRTATLLKHPAQA 406          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A6H5L2A5_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A5_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 9.670e-79
Identity = 124/149 (83.22%), Postives = 137/149 (91.95%), Query Frame = 0
Query:   18 QLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNE 166
            QLCLTAAVAAASHGIGVLY+DTANGCSVRRMQQIARSRYADANGEM ARQ+DALLDRLRV+RAFD++ VMSAL +Y+DGV EGG +GVYSDCRL+ILDSVTAV+SPLLGG KNP GHGLMA+LGHLLNRAASQCSACVLV    + S+E
Sbjct:   13 QLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMAARQVDALLDRLRVVRAFDVSRVMSALVAYIDGVMEGGRNGVYSDCRLIILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVGCFFLCSSE 161          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A835YM23_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM23_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.030e-34
Identity = 100/277 (36.10%), Postives = 127/277 (45.85%), Query Frame = 0
Query:    2 LHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSAL---------TSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGP--------------------------RAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACG-KTAKFAIGDGGVVD 242
            L  V EVVG++ +GKTQLC++AA  AAS GIGVLY+DT NGCS RR+Q+IA +R   A          A L  + + R + +  V++AL         T                  RLVILDS  AV++PLLGG  N  G   +ATL   L+  A   S  VLV N  VA                                RAALGA W   P++RL+L                      GA + R A + KHP +ACG   A+FA+G  GVVD
Sbjct:  116 LQQVTEVVGQTGAGKTQLCMSAAAVAASSGIGVLYIDTTNGCSPRRLQEIAAARGGSAAAP-------AALSHITIERCYSLANVLAALDGLATRLVRTPIATAAXXXXXXXXAHAIRLVILDSAAAVLAPLLGGEGNAPGAAALATLAAALSHTALSLSVAVLVTNGAVADRAPXXXXXXXXXGSRGFGXXXXXXXXXXXXKRAALGARWAAAPAVRLLLDG--------------------GAQSGRVAVLDKHPLRACGGAAARFAVGGAGVVD 365          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A1Y1HKY4_KLENI (DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKY4_KLENI)

HSP 1 Score: 120 bits (302), Expect = 7.440e-29
Identity = 87/245 (35.51%), Postives = 128/245 (52.24%), Query Frame = 0
Query:    5 VIEVVGRSSSGKTQLCLTAAVAAASH-GIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTS---YMDGV-TEGGLDGVYSD----CRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 240
            + E+VG S+SGKTQLCL AA AAA      V ++DT+N  S  R+ QI    +         +++  +  R+   +AFDI T +  L     +MDG  ++ G DG   D     +L+ILDS +A++SP+LGGA +  GH LM +L  LL + A + +  VLV N TV+     P+ ALG +W+ VPS+RL L+   E +                     TATV KH   ACG++  + +   G+
Sbjct:  101 ITELVGTSASGKTQLCLQAAAAAALELRASVAFIDTSNSFSAHRLAQIVTGLHGKDKFVEHKQELRNVARRVLCFKAFDIYTALRLLDDLLVHMDGAESKRGGDGNQGDFFQKLQLLILDSASAIISPVLGGA-HTQGHALMVSLSGLLRQIALKHNIAVLVTNHTVSGEGGRPKPALGESWKSVPSVRLALAREDESDCC-------------------TATVTKHTIGACGESVPYVLSRDGL 325          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F)

HSP 1 Score: 113 bits (282), Expect = 4.040e-26
Identity = 81/235 (34.47%), Postives = 118/235 (50.21%), Query Frame = 0
Query:    7 EVVGRSSSGKTQLCLTAAVAAASHGI-GVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 240
            E+ G  ++GKTQLC+T A + A+     VLY+DT  G S +R+Q I  +R        T + M A   RLR  R FD+  ++S L      + + G D  Y+  +LV++DSVTAVV+P+LGG +  +GHG+M  L   L   A + S  VL+ N  V  +    + ALG TW  VP  RL+L+    ++AS                  R A ++K   Q    +  F I D G+
Sbjct:  104 EITGGPATGKTQLCMTTAASVATTAQQNVLYIDTNGGFSSQRLQDIMAAR------GNTDKIMAAAFQRLRCARTFDLFELLSLLEMTKSSM-DSGSDAFYASLKLVVVDSVTAVVAPVLGGQQT-EGHGMMIHLARSLKALAVEYSVAVLLTNNQVRGDGTQRKPALGRTWSHVPHCRLLLTHDRSDDASLCTVNRPIN---------REARIIKSGRQPINVSCTFKIDDSGI 321          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI00148A19CE (DNA repair protein RAD51 homolog 4 isoform X1 n=4 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A19CE)

HSP 1 Score: 112 bits (279), Expect = 9.000e-26
Identity = 78/239 (32.64%), Postives = 120/239 (50.21%), Query Frame = 0
Query:    5 VIEVVGRSSSGKTQLCLTAAVAAASHGI-GVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGVVD 242
            V E+ G  SSGKTQ CL+  V+        V+++DT  G S  R+ +IA S Y + +       ++ +L  ++VI AFDI  +M+AL +  D + +  +D  Y   +L+++DS+TAV+ P LGG +  DGHGLM  L   L   A+  S CVLV N  +       + +LG TW  VP  RL++S   ++E++                  R   ++K    A G   K  I + G+ D
Sbjct:  102 VTEIAGEISSGKTQFCLSLCVSVVMKARQNVVFIDTCGGFSADRLAEIAESLYGEEH-------LEHILQSVKVIEAFDIFHLMTALQTIKDKMVKK-VDPFYDTLKLLVVDSITAVIYPSLGG-QQMDGHGLMVQLSLKLRHLAADFSLCVLVVNNVIGDG----KVSLGKTWSHVPHCRLLISHPKDQESNV-----------------RELVLIKSSRLATGGKTKIGITEKGIED 310          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI0010A4F16E (DNA repair protein RAD51 homolog 4 isoform X1 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4F16E)

HSP 1 Score: 110 bits (275), Expect = 5.500e-25
Identity = 82/247 (33.20%), Postives = 125/247 (50.61%), Query Frame = 0
Query:    2 LHHVIEVVGRSSSGKTQLCLTAAVAAASHGIG-VLYLDTANGCSVRRMQQIA-RSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDC--RLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGVVDMY 244
            L  V E+VG SSSGKTQ CL  A  AA+  IG V+YLDT N  S +R+   A +S    +N +   + +  +LDR+     F+I  +   L      +         SDC  RL+I+DSV+++++P+LGG+  P GH LM ++G LL + A + +  VLV N  V  +    + ALG +W+ VP +R++LS   E                       T +++KHP+  C    KF     GV+ ++
Sbjct:  106 LGQVTELVGPSSSGKTQACLQFATTAATKHIGFVIYLDTCNAFSPQRIAHYAGQSSGPVSNDQADHKPLQQVLDRIICYSVFNIFQMFDLLHQLEINLRSQMFK---SDCQVRLLIVDSVSSLITPILGGS-GPQGHALMISVGFLLKKLAHEHNLAVLVTNHMVGGDSGTSKPALGESWKTVPHVRILLSRDRESNIC-------------------TFSIIKHPSMVCPSVRKFL---DGVIGLF 326          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI000B77DE8F (DNA repair protein RAD51 homolog 4 isoform X4 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77DE8F)

HSP 1 Score: 107 bits (268), Expect = 2.530e-24
Identity = 78/234 (33.33%), Postives = 117/234 (50.00%), Query Frame = 0
Query:    7 EVVGRSSSGKTQLCL-TAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDC--RLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGD 237
            E+VG SSSGKTQLCL  AA  A  H   V++LDT N  S RR++   R        E        ++  +     FDI ++   L    + +   G  G   DC  R +I+DS++++++P+LGG+  P GH LM + G LL + A + +  VLV N  VA      + ALG +W+ +P +RL+LS     +A                    + ++LKHP+ A G+ A+F I D
Sbjct:   91 ELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHFVRQISGSVFNEK-------VMSNILCHSTFDIFSMFDVLHQLENSLKSQGHKG---DCKARTLIVDSISSLITPILGGS-GPQGHALMTSAGFLLKKLAHELNIAVLVTNHMVAGEGGNLKPALGESWKSIPHVRLLLSRDQGNKAC-------------------SISILKHPSLASGEVARFVIDD 294          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI001BB27994 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB27994)

HSP 1 Score: 108 bits (269), Expect = 2.890e-24
Identity = 81/237 (34.18%), Postives = 119/237 (50.21%), Query Frame = 0
Query:    5 VIEVVGRSSSGKTQLCLT-AAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 240
            V EVVG+++ GKTQ CLT A+  A S    VLY+DT  G    R+ +I    +   + ++TA    A L ++   + FD+  ++  L S    + + G D  YS  +LV+LDSVTAV++PLLGG K+ +G G+M  L   L   A+  S  V+V N  V      P+ +LG TW  VP  R+ L     +  +                  RTA+++K   QA   +   AIG+ GV
Sbjct:  102 VTEVVGQAAIGKTQFCLTLASCVAVSSEQNVLYVDTNGGFDAGRLHEIIA--HKSTSEKITA----AALQKVHCAKTFDLYDLLDLLESIKASI-DSGTDVFYSSLKLVVLDSVTAVLAPLLGG-KHSEGQGMMVHLARSLKSLAADYSIAVVVCNNMVRGERGEPKPSLGRTWLSVPHTRIQLRADGRDGITSRDDLR------------RTASLVKSQRQAINTSCNIAIGNQGV 318          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI000B790AAF (DNA repair protein RAD51 homolog 4 isoform X1 n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B790AAF)

HSP 1 Score: 107 bits (268), Expect = 3.630e-24
Identity = 78/234 (33.33%), Postives = 117/234 (50.00%), Query Frame = 0
Query:    7 EVVGRSSSGKTQLCL-TAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDC--RLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGD 237
            E+VG SSSGKTQLCL  AA  A  H   V++LDT N  S RR++   R        E        ++  +     FDI ++   L    + +   G  G   DC  R +I+DS++++++P+LGG+  P GH LM + G LL + A + +  VLV N  VA      + ALG +W+ +P +RL+LS     +A                    + ++LKHP+ A G+ A+F I D
Sbjct:  111 ELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHFVRQISGSVFNEK-------VMSNILCHSTFDIFSMFDVLHQLENSLKSQGHKG---DCKARTLIVDSISSLITPILGGS-GPQGHALMTSAGFLLKKLAHELNIAVLVTNHMVAGEGGNLKPALGESWKSIPHVRLLLSRDQGNKAC-------------------SISILKHPSLASGEVARFVIDD 314          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQZ5_ECTSI2.720e-11278.45RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L2A5_9PHAE9.670e-7983.22Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YM23_9STRA9.030e-3436.10P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1HKY4_KLENI7.440e-2935.51DNA repair protein RAD51 n=1 Tax=Klebsormidium nit... [more]
UPI0018D9AD9F4.040e-2634.47DNA repair protein RAD51 homolog 4-like n=1 Tax=Pa... [more]
UPI00148A19CE9.000e-2632.64DNA repair protein RAD51 homolog 4 isoform X1 n=4 ... [more]
UPI0010A4F16E5.500e-2533.20DNA repair protein RAD51 homolog 4 isoform X1 n=3 ... [more]
UPI000B77DE8F2.530e-2433.33DNA repair protein RAD51 homolog 4 isoform X4 n=1 ... [more]
UPI001BB279942.890e-2434.18DNA repair protein RAD51 homolog 4-like n=1 Tax=Ly... [more]
UPI000B790AAF3.630e-2433.33DNA repair protein RAD51 homolog 4 isoform X1 n=4 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..244
e-value: 2.0E-36
score: 127.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..243
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 4..242
e-value: 9.7E-11
score: 41.4
NoneNo IPR availablePANTHERPTHR46457DNA REPAIR PROTEIN RAD51 HOMOLOG 4coord: 4..239
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 1..161
score: 21.000809

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9275contigA-nodosum_M_contig9275:13181..16720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9275.2.1mRNA_A-nodosum_M_contig9275.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9275 11498..17083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9275.2.1 ID=prot_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=246bp
MLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQ
IARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEG
GLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQ
CSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASTSTA
AGVGTGEGHGAVTARTATVLKHPAQACGKTAKFAIGDGGVVDMYQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd