mRNA_A-nodosum_M_contig9275.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9275.2.1
Unique NamemRNA_A-nodosum_M_contig9275.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: D8LQZ5_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ5_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 4.480e-150
Identity = 260/399 (65.16%), Postives = 286/399 (71.68%), Query Frame = 3
Query:   60 PVPITLV-SLLSRDADQLALDCGVNVRKINELRYLVALRCQAQPPVLDRRFLSQGARADEEVTVRGHDTEGKGDAATTSAWRTGGGAGGSTGTGNLA-----------------------------------LSFESADTLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVA----SNEEGPRAALGATWEVVPSIRLVLSDASEEE--ASXXXXXXXXXXXXXGAVTARTATVLKHPAQA 1130
            PVPI L  SLLSRD +QLAL+CGV+++ +++LRYLVALRCQ QPPV DRR            T +GH  EGK             GAG ST                                         LSFESAD LYRQAR+VGGFVTTGSDSLD LLCKGLMLHHV+EVVGRSSSGKTQLCLTAAVAAASHGIGVLY+DTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRV+RAFDI+ VMSAL +Y+DGV EGG +GVYSDCRLVILDSVTAV+SPLLGG KNP GHGLMA+LGHLLNRAASQCSACVLVAN+TVA    S EEGPRAALG TWE VPSIR++L++AS     AS             G  + RTAT+LKHPAQA
Sbjct:   21 PVPIVLAESLLSRDPEQLALECGVSMKAVSKLRYLVALRCQPQPPVPDRRAPEDNGDGATPNT-QGHGGEGKR------------GAGSSTXXXXXXXXXXXXXXXXXXSPRRIGXXXXXXXXXXXXXXPPLLSFESADALYRQARDVGGFVTTGSDSLDNLLCKGLMLHHVVEVVGRSSSGKTQLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVVRAFDISRVMSALVAYIDGVMEGGRNGVYSDCRLVILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVANSTVAPRGISEEEGPRAALGLTWEGVPSIRVLLAEASAAAGGASGSGDAGGADHGTVGEASPRTATLLKHPAQA 406          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A6H5L2A5_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A5_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 4.830e-75
Identity = 124/149 (83.22%), Postives = 137/149 (91.95%), Query Frame = 3
Query:  504 QLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNE 950
            QLCLTAAVAAASHGIGVLY+DTANGCSVRRMQQIARSRYADANGEM ARQ+DALLDRLRV+RAFD++ VMSAL +Y+DGV EGG +GVYSDCRL+ILDSVTAV+SPLLGG KNP GHGLMA+LGHLLNRAASQCSACVLV    + S+E
Sbjct:   13 QLCLTAAVAAASHGIGVLYIDTANGCSVRRMQQIARSRYADANGEMAARQVDALLDRLRVVRAFDVSRVMSALVAYIDGVMEGGRNGVYSDCRLIILDSVTAVISPLLGGFKNPAGHGLMASLGHLLNRAASQCSACVLVGCFFLCSSE 161          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A835YM23_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM23_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.100e-41
Identity = 119/318 (37.42%), Postives = 150/318 (47.17%), Query Frame = 3
Query:  333 TGNLALSFESADTLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSAL---------TSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGP--------------------------RAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACG-KTAKFAIGDGGVVD 1178
            +G LA+ FESA   YR A   GG +  G  S+D LL  GL L  V EVVG++ +GKTQLC++AA  AAS GIGVLY+DT NGCS RR+Q+IA +R   A          A L  + + R + +  V++AL         T                  RLVILDS  AV++PLLGG  N  G   +ATL   L+  A   S  VLV N  VA                                RAALGA W   P++RL+L                      GA + R A + KHP +ACG   A+FA+G  GVVD
Sbjct:   76 SGPLAI-FESAAARYRYAMRQGGLLQMGCSSIDGLLGGGLALQQVTEVVGQTGAGKTQLCMSAAAVAASSGIGVLYIDTTNGCSPRRLQEIAAARGGSAAAP-------AALSHITIERCYSLANVLAALDGLATRLVRTPIATAAXXXXXXXXAHAIRLVILDSAAAVLAPLLGGEGNAPGAAALATLAAALSHTALSLSVAVLVTNGAVADRAPXXXXXXXXXGSRGFGXXXXXXXXXXXXKRAALGARWAAAPAVRLLLDG--------------------GAQSGRVAVLDKHPLRACGGAAARFAVGGAGVVD 365          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A1Y1HKY4_KLENI (DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKY4_KLENI)

HSP 1 Score: 133 bits (334), Expect = 4.430e-31
Identity = 96/277 (34.66%), Postives = 143/277 (51.62%), Query Frame = 3
Query:  369 TLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASH-GIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTS---YMDGV-TEGGLDGVYSD----CRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
            TL+ +       V+TG  S+D ++  GL    + E+VG S+SGKTQLCL AA AAA      V ++DT+N  S  R+ QI    +         +++  +  R+   +AFDI T +  L     +MDG  ++ G DG   D     +L+ILDS +A++SP+LGGA +  GH LM +L  LL + A + +  VLV N TV+     P+ ALG +W+ VPS+RL L+   E +                     TATV KH   ACG++  + +   G+
Sbjct:   69 TLFERLTTSTTLVSTGCPSIDDVIGGGLRPGTITELVGTSASGKTQLCLQAAAAAALELRASVAFIDTSNSFSAHRLAQIVTGLHGKDKFVEHKQELRNVARRVLCFKAFDIYTALRLLDDLLVHMDGAESKRGGDGNQGDFFQKLQLLILDSASAIISPVLGGA-HTQGHALMVSLSGLLRQIALKHNIAVLVTNHTVSGEGGRPKPALGESWKSVPSVRLALAREDESDCC-------------------TATVTKHTIGACGESVPYVLSRDGL 325          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI001BB27994 (DNA repair protein RAD51 homolog 4-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB27994)

HSP 1 Score: 129 bits (323), Expect = 9.060e-30
Identity = 91/268 (33.96%), Postives = 136/268 (50.75%), Query Frame = 3
Query:  372 LYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLT-AAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
            LY +      +++TG DS+D+LL  G+    V EVVG+++ GKTQ CLT A+  A S    VLY+DT  G    R+ +I    +   + ++TA    A L ++   + FD+  ++  L S    + + G D  YS  +LV+LDSVTAV++PLLGG K+ +G G+M  L   L   A+  S  V+V N  V      P+ +LG TW  VP  R+ L     +  +                  RTA+++K   QA   +   AIG+ GV
Sbjct:   71 LYDEVLSTVAYLSTGCDSIDKLLDSGVYTSEVTEVVGQAAIGKTQFCLTLASCVAVSSEQNVLYVDTNGGFDAGRLHEIIA--HKSTSEKITA----AALQKVHCAKTFDLYDLLDLLESIKASI-DSGTDVFYSSLKLVVLDSVTAVLAPLLGG-KHSEGQGMMVHLARSLKSLAADYSIAVVVCNNMVRGERGEPKPSLGRTWLSVPHTRIQLRADGRDGITSRDDLR------------RTASLVKSQRQAINTSCNIAIGNQGV 318          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI0018D9AD9F (DNA repair protein RAD51 homolog 4-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9AD9F)

HSP 1 Score: 127 bits (320), Expect = 2.510e-29
Identity = 90/257 (35.02%), Postives = 130/257 (50.58%), Query Frame = 3
Query:  405 VTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGI-GVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
            ++TG  SLD LL  GL    + E+ G  ++GKTQLC+T A + A+     VLY+DT  G S +R+Q I  +R        T + M A   RLR  R FD+  ++S L      + + G D  Y+  +LV++DSVTAVV+P+LGG +  +GHG+M  L   L   A + S  VL+ N  V  +    + ALG TW  VP  RL+L+    ++AS                  R A ++K   Q    +  F I D G+
Sbjct:   82 LSTGCSSLDELLDGGLYTSELTEITGGPATGKTQLCMTTAASVATTAQQNVLYIDTNGGFSSQRLQDIMAAR------GNTDKIMAAAFQRLRCARTFDLFELLSLLEMTKSSM-DSGSDAFYASLKLVVVDSVTAVVAPVLGGQQT-EGHGMMIHLARSLKALAVEYSVAVLLTNNQVRGDGTQRKPALGRTWSHVPHCRLLLTHDRSDDASLCTVNRPIN---------REARIIKSGRQPINVSCTFKIDDSGI 321          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: UPI0018F4FA24 (DNA repair protein RAD51 homolog 4 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F4FA24)

HSP 1 Score: 124 bits (312), Expect = 3.010e-28
Identity = 85/229 (37.12%), Postives = 124/229 (54.15%), Query Frame = 3
Query:  345 ALSFESADTLYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIG--VLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEG-PRAALGATWEVVPSIRLVLSDA 1022
            AL    AD +Y +  E    + TG   LD++L  GL    V E+ G   SGKTQ+CL AA A+ +HG+G  VL++D+  G +  R+ Q+ R+R  D   +  A      L R+RV+R+FD   V+ AL       ++ G+D      ++V++DSV+AV+SPLLGG ++ +G  +M  L   L   A +    V+V N      E G PR  LG +W  VPS R+VL  A
Sbjct:   63 ALPLSGAD-VYEELAETTAILPTGLPGLDQILDSGLYTGEVAELTGAPGSGKTQVCLCAA-ASVAHGLGRDVLFVDSTGGFTATRLLQLLRARTRDEEEQAGA------LRRIRVVRSFDAFGVLDALQDLRGSFSQQGMDAA-GPVKMVVVDSVSAVISPLLGGRQS-EGLAVMMQLARELKTLAREFGVAVMVTNHVTRDRETGRPRPGLGRSWSFVPSTRVVLEGA 281          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: W1PFT7_AMBTC (RECA_2 domain-containing protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1PFT7_AMBTC)

HSP 1 Score: 123 bits (309), Expect = 8.440e-28
Identity = 86/257 (33.46%), Postives = 130/257 (50.58%), Query Frame = 3
Query:  402 FVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLTAAVAAA-SHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSAL----TSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAI 1157
            F+ TG D +D LLC GL   ++ E+ G SSSGKTQ CL AA   A ++   VLYLDT+N  S +R+        A  N     R ++ ++  +     FDI ++   L     S    + +  +    S  RL+I+DS++++++P+LGG K P GH LM  +G +L + A   +  VLV N TV       + ALG +W+ VP  RL+LS    ++ S                     ++LKH + ACG+TA F +
Sbjct:   88 FLLTGFDGIDTLLCGGLCEGNLTELAGPSSSGKTQFCLHAAAHVAYTYMCSVLYLDTSNSFSSKRISYRVNRLLASPNKGEKGRSLEGIMSSILSHSVFDIFSMFETLHQLELSLSSQLFQAEIQN--SKLRLLIVDSISSLITPILGG-KGPQGHSLMLNVGFILKKLAIDYNLAVLVTNHTVVGEGGNSKPALGESWKSVPHTRLLLS---RDQMSNIC----------------NMSILKHTSMACGQTASFRL 322          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A7L3N2D3_9AVES (RA51D protein (Fragment) n=4 Tax=Trochilidae TaxID=9242 RepID=A0A7L3N2D3_9AVES)

HSP 1 Score: 123 bits (308), Expect = 9.080e-28
Identity = 93/267 (34.83%), Postives = 137/267 (51.31%), Query Frame = 3
Query:  372 LYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCL-TAAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGP-RAALGATWEVVPSIRLVLS--DASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIG 1160
            LY + +     + TG  SLD+LL  GL    V E++G   SGKTQ+CL  AA  + S    VL+LD+  G S  R+ Q+ ++R  D   + T       L R++V+R FDI  ++SAL    D +++  L  V    ++VI+DSV+AV+ PLLGG K  +G  +M  L   L   A + S  V+V N     +  GP + ALG +W  VPS R++L   +A+ E+A+                T R A++ K P Q  G   +  IG
Sbjct:   71 LYEELKSTTAILPTGIPSLDQLLDSGLYTGEVTELMGAPGSGKTQVCLGIAATVSLSLKHRVLFLDSTGGLSASRLYQMLQARVEDEEEQAT-------LQRIQVVRVFDIYEMLSALQELRDCLSQQVLSSV-GPLKIVIIDSVSAVIYPLLGG-KQSEGLAIMMQLARELKSLAREFSLTVVVTNQVTRDSSTGPLKPALGRSWSFVPSTRVLLESKEATWEKAT----------------TQRVASLTKSPRQPTGIQVELDIG 312          
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Match: A0A7M7LLB9_STRPU (RECA_2 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LLB9_STRPU)

HSP 1 Score: 123 bits (308), Expect = 1.140e-27
Identity = 88/269 (32.71%), Postives = 132/269 (49.07%), Query Frame = 3
Query:  372 LYRQAREVGGFVTTGSDSLDRLLCKGLMLHHVIEVVGRSSSGKTQLCLT-AAVAAASHGIGVLYLDTANGCSVRRMQQIARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEGGLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQCSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVL-SDASEEEASXXXXXXXXXXXXXGAVTARTATVLKHPAQACGKTAKFAIGDGGV 1172
            LY +      +++TG DS+D+LL  G+    + E+VG+++ GKTQ CLT A+  A S    VL++DT  G    R+  I       A+   + +   A L ++     FD+  ++  L S    + +   +  YS  +LV+LDSVTAV++PLLGG K+ +G G+M  L   L   A+  S  V++ N  V      P+ ALG TW  VP  R+ L +D  +   S                  RTA ++K   QA   +   AIGD GV
Sbjct:   71 LYDEVISTVAYLSTGCDSIDKLLDGGVYTSELTEIVGQAAVGKTQFCLTLASCVAVSSEQNVLFIDTNGGFHASRLHDII------AHKSTSEKITSAALQKVHCATTFDLYGLLDLLESIKASI-DSASEAFYSSLKLVVLDSVTAVLAPLLGG-KHSEGQGMMVHLARSLKSLAADYSIAVVICNNMVRGERGEPKPALGRTWLTVPHTRIQLRADGKDGNTSRNTETSIN----------RTACLVKSQRQAVNSSCCIAIGDQGV 321          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9275.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQZ5_ECTSI4.480e-15065.16RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L2A5_9PHAE4.830e-7583.22Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YM23_9STRA2.100e-4137.42P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1HKY4_KLENI4.430e-3134.66DNA repair protein RAD51 n=1 Tax=Klebsormidium nit... [more]
UPI001BB279949.060e-3033.96DNA repair protein RAD51 homolog 4-like n=1 Tax=Ly... [more]
UPI0018D9AD9F2.510e-2935.02DNA repair protein RAD51 homolog 4-like n=1 Tax=Pa... [more]
UPI0018F4FA243.010e-2837.12DNA repair protein RAD51 homolog 4 n=1 Tax=Tachygl... [more]
W1PFT7_AMBTC8.440e-2833.46RECA_2 domain-containing protein n=3 Tax=Amborella... [more]
A0A7L3N2D3_9AVES9.080e-2834.83RA51D protein (Fragment) n=4 Tax=Trochilidae TaxID... [more]
A0A7M7LLB9_STRPU1.140e-2732.71RECA_2 domain-containing protein n=1 Tax=Strongylo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9275contigA-nodosum_M_contig9275:11498..17083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQZ5
Preferred nameRAD51D
PFAMsRad51
Model size1553
Max annot lvl2759|Eukaryota
KEGG koko:K10871
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008092,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0015630,GO:0015631,GO:0016043,GO:0016444,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032200,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0036297,GO:0042148,GO:0042592,GO:0042623,GO:0043015,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0048518,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080134,GO:0090304,GO:0090735,GO:0097159,GO:0098687,GO:0140013,GO:0140097,GO:1900424,GO:1900426,GO:1901360,GO:1901363,GO:1903046
Exons11
Evalue4.46e-113
EggNOG OGsCOG0468@1|root,KOG1433@2759|Eukaryota
Descriptionrecombinase activity
Cds size738
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9275.2.1prot_A-nodosum_M_contig9275.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9275 13181..16720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.2694366-UTR-A-nodosum_M_contig9275:11497..115771680870400.2694366-UTR-A-nodosum_M_contig9275:11497..11577Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9275 11498..11577 +
1680870400.2814586-UTR-A-nodosum_M_contig9275:12008..121071680870400.2814586-UTR-A-nodosum_M_contig9275:12008..12107Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9275 12009..12107 +
1680870400.2965944-UTR-A-nodosum_M_contig9275:12631..128761680870400.2965944-UTR-A-nodosum_M_contig9275:12631..12876Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9275 12632..12876 +
1680870400.3174162-UTR-A-nodosum_M_contig9275:13152..131801680870400.3174162-UTR-A-nodosum_M_contig9275:13152..13180Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9275 13153..13180 +
1680870400.444586-UTR-A-nodosum_M_contig9275:16720..170831680870400.444586-UTR-A-nodosum_M_contig9275:16720..17083Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9275 16721..17083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.3311894-CDS-A-nodosum_M_contig9275:13180..132341680870400.3311894-CDS-A-nodosum_M_contig9275:13180..13234Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 13181..13234 +
1680870400.3455992-CDS-A-nodosum_M_contig9275:13553..136821680870400.3455992-CDS-A-nodosum_M_contig9275:13553..13682Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 13554..13682 +
1680870400.3578892-CDS-A-nodosum_M_contig9275:14426..145431680870400.3578892-CDS-A-nodosum_M_contig9275:14426..14543Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 14427..14543 +
1680870400.3742702-CDS-A-nodosum_M_contig9275:14891..149881680870400.3742702-CDS-A-nodosum_M_contig9275:14891..14988Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 14892..14988 +
1680870400.3877995-CDS-A-nodosum_M_contig9275:15346..154171680870400.3877995-CDS-A-nodosum_M_contig9275:15346..15417Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 15347..15417 +
1680870400.400737-CDS-A-nodosum_M_contig9275:15793..158271680870400.400737-CDS-A-nodosum_M_contig9275:15793..15827Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 15794..15827 +
1680870400.4124064-CDS-A-nodosum_M_contig9275:16087..162601680870400.4124064-CDS-A-nodosum_M_contig9275:16087..16260Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 16088..16260 +
1680870400.4265003-CDS-A-nodosum_M_contig9275:16657..167201680870400.4265003-CDS-A-nodosum_M_contig9275:16657..16720Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9275 16658..16720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9275.2.1

>prot_A-nodosum_M_contig9275.2.1 ID=prot_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=246bp
MLHHVIEVVGRSSSGKTQLCLTAAVAAASHGIGVLYLDTANGCSVRRMQQ
IARSRYADANGEMTARQMDALLDRLRVIRAFDITTVMSALTSYMDGVTEG
GLDGVYSDCRLVILDSVTAVVSPLLGGAKNPDGHGLMATLGHLLNRAASQ
CSACVLVANTTVASNEEGPRAALGATWEVVPSIRLVLSDASEEEASTSTA
AGVGTGEGHGAVTARTATVLKHPAQACGKTAKFAIGDGGVVDMYQ*
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mRNA from alignment at A-nodosum_M_contig9275:11498..17083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9275.2.1 ID=mRNA_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5586bp|location=Sequence derived from alignment at A-nodosum_M_contig9275:11498..17083+ (Ascophyllum nodosum dioecious)
ATGCCGCGGCTCGATCGAATGGGAGTAGACAGGAGGACTTTAGACAGGCT CGCCTCGCTCCGGTACCTATAACTCTGGTGGTATGCATTAACCGGTACAG CAGCGTAAGCACTCGCCTTATTGGAGCTCCACAGGCGGGCGAGATGTTCC AAAAAAAGCTTAGTAGAACCTCCGAATCGTTCACCTTCAGGGGTTAATTT GCTGGAATATACCAGGTACAGTAGGGGGACTATCGTTTCGTGCCAGCTTT GTCTATTACATAATACCAGCGACCCCAACTTTCCCACGTGTAGACATTTT TTTTGGATAAAAATCGTGGGGGCCATGACGTAGTTTAAACAAAACAGTAG GTGTAGAAGTTAAGACAAACACGTTTCTTTTAATGCCTCTCACTCTCCGA CTTAAGCGAAACTGTATTGACTACTGTATTGACTACTGTCTTGCCTACTG TATACTCTTTCACCCAACACTGTGCGCCGAACGCCGGATTCAATCCGTGA CCTCAGCGGAGTCCCTCCTGTCCCGAGATGCCGATCAGCTAGCGCTGGAT TGCGGGGTTAACGTCCGCAAGATTAACGAGCTGCGGTACCTTGTGGCCCT TCGATGTCAGGTCAAGGCCCGTCGTATTTCTTAGCACATGCACCCGGCGT ACCAAGCGCAAcACAgCATCATCACGCATGCGAGGTCTTCAGATCTGTCG TAATATTACTGTCGTCTATAGATGGCGAACTAATGAGCAATCCAAAACAC AGTCAAGTTATAAGCACCATGCATACATACATACATAGGTATATACTGAC GGTTGTTGGTTTTGGAACTCTTTATGGAGTAGATCGCTCTAGTGCCCGAC CGTTTTATACTGCCGTGACCTCGGAAGAATCTGTTACTTTTTTATTTTGT TCGTTGCTCACGGCGAACACCTGTAAGAGAAACGGCGTCAGTGCACGTGT CCTCGACGCGGATGGTCAGTTCCCCACCTTTTTGCCCTTTGTATAGGTTG GTCGCATGTTAACTCGACACTTGTTGTATTTTTTCCACGTACAACGGTCT CTTAACTAGAGAATTCCCCTTCCACCACGCACCTGTGTTCCACCACGCAC CTGTCTTCCACCACGCACCCGTCTTCCATCACAGGCTCAGCCACCCGTCT TGGACAGAAGATTCTTGTCCCAGGGAGCGAGAGCAGACGAAGAAGTTACG GTCAGAGGACACGATACGGAGGGAAAAGGAGACGCGGCGACGACATCCGC GTGGAGGACGGGGGGTGGGGCGGGAGGGAGCACGGGCACCGGGAATCTCG CGCTCTCGTTCGAATCCGCGGACACCCTTTATAGGCAGGCGAGAGAAGTC GGCGGATTCGTCACGACGGGATCTGACAGGTATCGCATCAAGTGACGAGA AAATAGGGCTTCTTTCCAAAAGGCTTGCCGGCTCGACGGGATCTTCTGAA TCCTTATAAAACGTGGTGCTGTTCAAGCATATCACGTAGCGGGAAAGTTG AAGCTGGCTTGCGTTGGTCGACAAGTCGAAAGCTTTTGGAGGCTGTTGCC TCAACTTCTGGCTAATACCATGCCGTCGATGGTTCAGACCGCGTCGACAC TATTTTTCTTTGCCGACGGTCGCGGTCGCCCTCTCCTGTTGTTCGCGTGC CTAAGCCTGGATCGTCTTCTGTGCAAGGGTCTCATGCTGCACCACGTCAT AGAAGTGGTCGGGCGATCCTCCTCAGGAAAGACACAGGTAACTTTAAGAC GCAGAAACAGATCGACGCACACGTGCCCCGCACGCGGTGCCAGGGCATGG TCCTTTCAGGCGCTCCGTCTGCCAGCGCTTATCCCGAACCGAACCCTTTC TCTGTGGAAAAAACATCCCCCTCTATCGCGGTGCAAACGCCCCGCCGCAC CCCACCCTAATCTCCATGTAGCCTCAAACAATAATGGGGTGCTTCGTTAG CCTTTTATCTGCAATTCTCCCCCCACATCCTCAAGCCTTCGTGTTGGGTA TACTGTAGCCATCATTCTATTGCCGCACATCTCCCTAACGTCCGCACCGC CCACAGCTGTGTTTGACGGCGGCGGTGGCGGCAGCGTCTCACGGCATCGG AGTCCTCTACCTCGACACCGCGAACGGCTGTAGCGTGCGGCGAATGCAGC AGATCGCTCGGTCGCGGTATGCCGACGCCAACGGGGTGAGCACAGGGCGT TTTGATACTCTGGCCAATCTTGAGGATATTGGGTGCGTAATCACGCGCGA AATATAATTTTTGGCGCTGTCGAAATGCGTTGAGAGCGCCTGCTTTGGTG CGGGTGCTCGACAAAGAACAGTGGCCGTGCAAAGTCGAGCCTCTATCGAC AGCTGGTGGTTGTGTCAACGGGGTTGTATGATACCTTTGCCGTGCCCAGC GGCGGTATGGTGTGAAAGGACATGCATGTCTGCAACTTGCGCACCCTTTG TACGAGTACGCGTACAAGTATTTAGATACCTGGTATCTACCACGTGATAC CATTGTCTGATATTTCAATTGTATCGTCGAAAGGCAGTGTTATTTATCAG GTAAAGCCTAACGTCGTTTGTTCTCTCTCTCTTCTATCAAAGCACGGGAT AAGAAAATATCACAGGCAGGCGCTCTTGCTTCCTGTTCCGCTTGTCACAT TCGTAGACGCCGTTTCGGGGTGCATGCGCAAGGAGATACACACAATTTTT AACCCGCCTGCAAAGTACTGATACACCACAATATAAATCTCTACAGAGCC TCATGTCACTTAGACCTTTTCTCATTCAAGTGCGTGTCTATTTTGTTGCA GGAGACAACTTTCCACCGACCTCGCAAAATCCCCTTTCCACGACCCAAAC GTTGCCAAAAACAGTGCCTTTCCGCGCGTCCACTCTTACGTCCCCCGTCC GCCGTCTGGTGACACTCTTCCGTCCCCAGGAGATGACGGCGCGGCAGATG GACGCTTTGTTGGACCGACTACGGGTGATCCGCGCGTTCGACATCACAAC GGTCATGTCCGCCCTCACGTCTTACATGGACGGGGTCACCGAGGGGGTAA GTGGAGGAGGAAAAAGGCTGACAGTACAATGGAGATACATGGGAAGGCGA ATACAATGCGCGTGCTTTTACCGCAGTTGGCAGTTGGAGTTCGCCGGCGA CCTTCCGAATATTATACCATACCTCGTAGGAGCAATCGTGCACAATTCTC GGTGCTTAACCTACGCATTGACTTACAGCGGAAAAGCCGAAAACCGGCCT GTGGACGATCAAGGAAAGGGTGAACGAGAGCGGTCGGGCGATATTTGTAC TTTGGCAGGTGAATGAGAGGGCGGGCAGGAAGCACCACCCACTCCTCATG AGTGATCATCCCGCCTGCTCCGTAATTTTTTATGCTTTTACAAGGGTCTG GACGGCGTATACAGCGACTGCCGCTTGGTGATTCTGGATTCCGTGACGGC AGTGGTTTCGCCGCTTCTCGGAGGAGCAAAAAACCCCGACGGTGAGAAAA ATCTATCTTGGTTGAAACCTTTTGACTTGGAAACGCTCTGACAGACGATG TTGGAATTTGCTAGCGATCTTACGCGCTCGATTCAACCTCGATAGGGTCA AGGTATGATACACGGGGGGTATCGAGCTTCGAGGCGCCTTTCCCGATACA CAGCCGAGATGTCGCACTCTCCACGGAATCATATATAGACTCTTCTTCTT ATATGTAGAAAATAATCACGGATGCTAACACCCCCCCCCTTCGCCTCCCC ATTCAGAGCATTTACTCAAGAGCATTCCCAACTATCCTTGATACCTTCCT TGCCCCCGCGATCCGCATTTTCCCACGTCGATCACCCGGCTTGTGGTAGG CCATGGGCTGATGGCGACCTTGGGCCATCTCCTCAACAGAGCTGCCTCGC AGTGCAGCGCATGCGTTCTGGTGAGACTAGCTTGCACGCGCTATTTTTTC TGACGGACGACGGTTACTCATGCAGTCTAGGTTGATGGAAACGATGGAGA CGTTTTATTCACTCTAAGACGCGGTAAAGGGCTTGTTGGGCGTTATGCGG TTATTCGTGTGATGAATGTTGGCGGCCAAGCCAGCCGTGAACGCTACGGG CCGTCGAAAGTCGCTGGTGTCCGTGCAAGGGTTTCGGCCATTGCCACTAC TCTCTGAACAGTGTGGAACGCTGTTATTTTCGGCGGTTCTCGTACATGCA CCGGTTGCGATTCCCGCGTTCTCTCTGATATGTTCGAAAAGCGGTTCCGT TGTGACTCCCCCCCCCCTCCTGCCTCCATTTCCCGACGCTCTACAGGTTG CCAATACCACTGTCGCGTCGAACGAAGAGGGTAAGAGATATCTTGATTTT TTATTTTTGGATAAGAGGGGGAGTTGAAAGAAAGGGAATACAATcacccc CCCCCCTGCGATATCATTGCTGCGCCTCGAATCGAGAAGTGCCTAATAGT GTCGTTTCTCGTACTTACGTGTTGCCTTGTTGAAGGTATACGCGAGCGCA TCTATTTCTTGATATTATGCAGCCACCGCCCCCGCCAACCGCGCGCCTAT CTGGGTACTCTTTTCTTCGCACGAtgTGTACCCTCCCAAGGACCCCGAGC TGCGTTAGGTGCGACGTGGGAAGTCGTCCCGTCAATACGCTTGGTGCTGT CGGATGCTTCAGAGGAGGAAGCCTCGACGAGCACGGCGGCCGGAGTCGGC ACAGGGGAAGGGCACGGCGCAGTCACGGCTAGGACTGCGACGGTCCTAAA GCATCCTGCGCAGGTATTACCACGGCCATTCTTACCCGAGGCGAACCTCT TCGTTGTCTTGGTTTGGTACTGGAGTTCGATGTTGATTTTCTGCATCCGT AGTTCCATTAGATGGCCACGGTTGATCAGCAGCATTTCTCACTCTCTCCT CCTCCTTTTCCAATGCATCGTGACACTCAATATCGTTCAGTGGGCGAATT CTTTTGGAAATATTTTGCAGAACATTTTCTCAGGGCGAAAGCTCTTCTCC CATACGCAGTATCGAGGTTCTAGAGCGAAAGCCCGACTATGGTCATATAG AGGATAAGACTGCCACATTCCAAACGCACGGGCGCCGGCAATTTTTCTTC TGCCATTCCCTTGACTTTTCTCTATTTCTCTGTATTGTTTGGGCCGCCTG TTATCCATAGGCCTGTGGGAAAACGGCGAAGTTCGCGATCGGGGACGGGG GAGTCGTGGACATGTACCAGTGATAAACCAGCGACCCACCTGGAAAATCA ACATTCAGAAGGAAAACCCTTCGAGCCGATGCCCGTTGTTTTTTCAACCG TCTGTAATAGTTAATACAGTCTTTGCTTCGGTGCTAGAGCAATGCCCATG TCTTCAACGCTTATACCTCTGGATCTGTGCGTTTCTACGTGAAGGTGTGT TTGGGAAAACATACACGGGCACAAAATTATTGATTTTCTCGCTGGGCGGA ACGATTGAGTGTTTAAAGAAAATTCAGAACGCACCTAGACCTTCTGAGCA ACCCCCAGTCAGGGGGAAAAAATGTCAAAACGTTTAGGTGGGATCAATAG CTTAAAATAGAAAACCATGGCATTTAAACGGGTAGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9275:11498..17083+

>mRNA_A-nodosum_M_contig9275.2.1 ID=mRNA_A-nodosum_M_contig9275.2.1|Name=mRNA_A-nodosum_M_contig9275.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at A-nodosum_M_contig9275:11498..17083+ (Ascophyllum nodosum dioecious)
ATGCTGCACCACGTCATAGAAGTGGTCGGGCGATCCTCCTCAGGAAAGAC
ACAGCTGTGTTTGACGGCGGCGGTGGCGGCAGCGTCTCACGGCATCGGAG
TCCTCTACCTCGACACCGCGAACGGCTGTAGCGTGCGGCGAATGCAGCAG
ATCGCTCGGTCGCGGTATGCCGACGCCAACGGGGAGATGACGGCGCGGCA
GATGGACGCTTTGTTGGACCGACTACGGGTGATCCGCGCGTTCGACATCA
CAACGGTCATGTCCGCCCTCACGTCTTACATGGACGGGGTCACCGAGGGG
GGTCTGGACGGCGTATACAGCGACTGCCGCTTGGTGATTCTGGATTCCGT
GACGGCAGTGGTTTCGCCGCTTCTCGGAGGAGCAAAAAACCCCGACGGCC
ATGGGCTGATGGCGACCTTGGGCCATCTCCTCAACAGAGCTGCCTCGCAG
TGCAGCGCATGCGTTCTGGTTGCCAATACCACTGTCGCGTCGAACGAAGA
GGGACCCCGAGCTGCGTTAGGTGCGACGTGGGAAGTCGTCCCGTCAATAC
GCTTGGTGCTGTCGGATGCTTCAGAGGAGGAAGCCTCGACGAGCACGGCG
GCCGGAGTCGGCACAGGGGAAGGGCACGGCGCAGTCACGGCTAGGACTGC
GACGGTCCTAAAGCATCCTGCGCAGGCCTGTGGGAAAACGGCGAAGTTCG
CGATCGGGGACGGGGGAGTCGTGGACATGTACCAGTGA
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