prot_A-nodosum_M_contig918.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig918.18.1
Unique Nameprot_A-nodosum_M_contig918.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length136
Homology
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438FZX1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FZX1_VITVI)

HSP 1 Score: 103 bits (257), Expect = 5.020e-24
Identity = 58/127 (45.67%), Postives = 74/127 (58.27%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +EKEEMK  PY   VG+LM+A   TRPDIA  V  + R+  NPG  H KA  K+ +YL  TK+
Sbjct:  109 LGEASYVLGIKILRDRVNGVLKLSQRAYIEKILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEKEEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKD 234          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438KM46_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KM46_VITVI)

HSP 1 Score: 101 bits (252), Expect = 2.290e-23
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+EEMK  PY   VG+LM+A   TRPDIA  V  + R+  NPG  H KA  K+ +YL  TK+
Sbjct:   11 LGEASYVLGITILRDRANGVLKLSQKAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKD 136          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: Q849C0_ASTYP (Reverse transcriptase (Fragment) n=1 Tax=Aster yellows phytoplasma TaxID=35779 RepID=Q849C0_ASTYP)

HSP 1 Score: 98.6 bits (244), Expect = 2.490e-23
Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKK--EAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKI 116
            MG A++ +G  ITR+RK +++  DQ  Y+ES++KRFN+ +     IP   G + LSK   P+  EE E+MK  PY+EAVG+L++AA ++RPD++ AV  V+RF +NPG+ H KAV +I
Sbjct:   62 MGIAKFILGFRITRDRKNKKIFIDQRAYLESVLKRFNMDQCNPVSIPINVG-ERLSKEQSPKTVEEAEKMKNVPYQEAVGSLLFAAQVSRPDLSYAVSCVSRFNKNPGVPHWKAVKRI 178          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438HF44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HF44_VITVI)

HSP 1 Score: 101 bits (251), Expect = 2.670e-23
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+EEMK  PY   VG+LM+A   TRPDIA  V  + R+  NPG  H KA  K+ +YL  TK+
Sbjct:   81 LGEAFYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKD 206          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: UPI000D42B3CC (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000D42B3CC)

HSP 1 Score: 100 bits (248), Expect = 2.750e-23
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNV--KKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGG 133
            +G+A Y +G  I R+R  R +   Q LY+E ++KRFN+   K   +P   G+  LSK   P+ PEE+++M   PY  A+G+LM+A   TRPDIA AV   +R+  NPGL H  AV  I +YL  TK+      GG
Sbjct:  109 LGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKRFNMLDSKRGLLPVRHGIH-LSKEMSPKTPEERDKMARIPYASAIGSLMYAMLCTRPDIAYAVSLTSRYQSNPGLEHWIAVKNILKYLRRTKDLFLIYGGG 242          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438BMD3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BMD3_VITVI)

HSP 1 Score: 101 bits (251), Expect = 3.210e-23
Identity = 56/127 (44.09%), Postives = 73/127 (57.48%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R     K  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+EEMK  PY   VG+LM+A   TRPDIA  V  + R+  NPG  H KA  K+ +YL  TK+
Sbjct:   11 LGEASYVLGIKILRDRANGVFKLSQRAYIEKILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKD 136          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438BR63_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BR63_VITVI)

HSP 1 Score: 100 bits (250), Expect = 5.190e-23
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +GV TLS+ D P+ PEE+E M   PY  AVGA+M+  T TRPD+  A+   +R+  NPG  H K V  I +YL  TK+
Sbjct:   17 LGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVTYALSVASRYQANPGEEHWKVVKTILKYLRRTKD 142          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438D1W2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D1W2_VITVI)

HSP 1 Score: 102 bits (253), Expect = 8.270e-23
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R    LK  Q  Y+E ++KRFN+   K  K P   G    SKA  PQN +E+EEMK  PY   VG+LM+A   TRPDIA  V  + R+  NPG  H KA  K+ +YL  TK+
Sbjct:   11 LGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKG-DKFSKAQCPQNNDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYLQGTKD 136          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A2I0I835_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I835_PUNGR)

HSP 1 Score: 99.0 bits (245), Expect = 1.160e-22
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQ 134
            +G+A Y +G  I R+R  R +   Q LY++ ++KRFN++  K   +P   G+  L KA  P+ PEE+EEM   PY  A+G+LM+A   TRPDIA AV   + +  NPGL H  AV  I +YL  TK+      GG+
Sbjct:   95 LGEAIYTLGIRIYRDRPKRLIGLSQTLYLDKVLKRFNMQDSKRGLLPMRHGIH-LFKAMSPKTPEEREEMAQVPYASAIGSLMYAMLCTRPDIAYAVSVTSEYQSNPGLDHWIAVKNILKYLRRTKDMVLVYGGGE 229          
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A438K5H3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5H3_VITVI)

HSP 1 Score: 102 bits (254), Expect = 1.180e-22
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 0
Query:    1 MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKE 125
            +G+A Y +G  I R+R  R L   Q +Y+++++KR+N++  K   +P  +GV TLS+ D P+ PEE+E M   PY  AVGA+M+  T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+
Sbjct:  536 LGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRYQANPGEEHWKVVKTILKYLRRTKD 661          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438FZX1_VITVI5.020e-2445.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KM46_VITVI2.290e-2344.88Retrovirus-related Pol polyprotein from transposon... [more]
Q849C0_ASTYP2.490e-2346.61Reverse transcriptase (Fragment) n=1 Tax=Aster yel... [more]
A0A438HF44_VITVI2.670e-2344.88Retrovirus-related Pol polyprotein from transposon... [more]
UPI000D42B3CC2.750e-2342.22hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A438BMD3_VITVI3.210e-2344.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BR63_VITVI5.190e-2341.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A438D1W2_VITVI8.270e-2344.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0I835_PUNGR1.160e-2241.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438K5H3_VITVI1.180e-2242.52Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig918contigA-nodosum_M_contig918:138943..139350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig918.18.1mRNA_A-nodosum_M_contig918.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig918 138940..139863 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig918.18.1 ID=prot_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGV
QTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVAR
FCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQG*
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