mRNA_A-nodosum_M_contig918.18.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI) HSP 1 Score: 142 bits (357), Expect = 3.380e-34 Identity = 98/284 (34.51%), Postives = 152/284 (53.52%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKE--AKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQG*F--GLWTQDDRLECGDAR-----------------------ITAAGTEAESLPYRR*SRMYYF*DRCSNYGM*LN------VFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKF 753
DMG A++ +G ITR+R ++++ Q Y+E ++KRFN++ ++IP +S + LS EP++ EE+ +M PY+EAVG+L++A+ ++RPDIA AV +V+RF NPG AH AV +I +Y+ T ++ DG + G D + + R + + TEAE + ++ + S M + +F DNEGA KLA N RTKHIDV+HH VR+ + + + Y+ S + AD LTKPLD +KF
Sbjct: 613 DMGAAKFVLGFQITRDRNSKKIWISQQAYLEQVLKRFNMENSNPSRIPMSSN-EKLSHQQEPKSEEERMKMNKIPYQEAVGSLLFASQVSRPDIAQAVNSVSRFNGNPGPAHWIAVKRILRYVRGTTDYKLQFDGNKSSVMHGYCDADWAADIDERRSLTGYIFVKCDAPISWCTKRQPTVALSTTEAEYMSLSAATQEALWLRGISLELMPASCIGPTRIFVDNEGARKLALNGAYQARTKHIDVRHHFVRERIQKKEIELEYIPSAEMVADSLTKPLDAEKF 895
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 134 bits (338), Expect = 3.800e-33 Identity = 99/298 (33.22%), Postives = 149/298 (50.00%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECG----------------DARITAAGTEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNVV 786
++G+ +++GC I+R+R+A ++ Q Y+ ++++RFN+ + + IPA S A++ ++ E EE P+RE VG LMW A TRP+ + AVR VAR P + KA KI YL T K D YVD F D R G ++ + +EAE + + +F + R S ++VFEDNEGAI LA N +S R+KHIDV+HH +R+ ++ + V +V S++QHAD+LTK L F H F+L V
Sbjct: 97 NLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDAD---FASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFVLGSV 384
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 139 bits (349), Expect = 3.920e-33 Identity = 106/304 (34.87%), Postives = 149/304 (49.01%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECGDARITAA----------------GTEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNVV*FDEVF 804
++G+ +++GC R+R+A ++ Q Y+ S+++RFNV + + IPA S ++ ++ E E P+RE VG+LMW A TRPDI+ AVRAVAR P +H KA KI YLL T K D YVD F D R G + A+ +EAE L + F + R S ++V EDNEGAI LA N +S R+KHIDV+HH +R+ ++ + V +V SE+QHAD+LTK L F H F L + VF
Sbjct: 939 NLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDAD---FASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFALGSRKYKSVF 1232
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 135 bits (340), Expect = 6.420e-33 Identity = 99/297 (33.33%), Postives = 141/297 (47.47%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWG--------------DYVDGGQG*FGLWTQDDR------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
++G+ +Y GC RN++ L Q + + + + V +P +SGV+ LS D + E FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P L H A M I Y T +G Y D F D R + CG + T + TEAE + + F + + GM + VFEDN+GAI+LA N ++ +KHIDV+HH +R+ + + + V +V S Q AD LTK L F H F++N+
Sbjct: 175 NLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADAD---FASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A0A9Z147_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z147_LYGHE) HSP 1 Score: 132 bits (333), Expect = 1.800e-32 Identity = 93/284 (32.75%), Postives = 146/284 (51.41%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAA---SGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQ-G*FGLWTQDDRLECGDARITAAG------------------------TEAESLPYRR*SRMYYF*DRCS-----NYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKF 753
D+G+A+ +G +TR+R+A+ + Q Y+E M+KRF++ +A P S + SK PQ +E+E M+ PY+EA+G+L++AA ++RPDIA A+ +++RF NPG+AH V ++F+YL T + DG + G + D D R + G TEAE + ++ + S + + +F DN+GA LA N RTKHIDV+HH +R+ A+ + Y+ + AD LTK LDV+KF
Sbjct: 89 DLGEAKSVLGFQLTRDRQAKRIWISQQHYIEEMLKRFHM--DAANPVTTPMSNSEKFSKNQAPQTADERERMRKIPYQEAIGSLLFAAQVSRPDIAFAISSLSRFNNNPGMAHWTGVKRVFRYLRGTSSYKLQFDGLKAGPIHGYCDADWASDPDERRSVTGYIFVKCNGPISWCTKRQPTVALSTTEAEYMAMSSAAQEGLWLRGLSEEIEQSSQIPTQIFCDNQGARNLALNGAYQPRTKHIDVRHHFLRERIQAKLLAFTYIPTNRMVADSLTKALDVEKF 370
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 131 bits (329), Expect = 2.510e-32 Identity = 100/296 (33.78%), Postives = 144/296 (48.65%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECGDARITAAG----------------TEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILN 780
++G+ +++GC R+R+A ++ Q Y+ S+++RFNV + + IPA S ++ ++ E E P+RE VG+LMW A TRPDI+ A+RAV R P +H KA KI YLL T K D YVD F D R G + A+ +EAE + F + R S ++V EDNE AI LA N +S R+KHIDV+HH +R+ ++ + V +V SE+QHAD+LTK L F H F+L
Sbjct: 41 NLGEVRFFLGCAFVRDREAGTIEISQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDAD---FASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFVLG 326
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.260e-32 Identity = 98/297 (33.00%), Postives = 147/297 (49.49%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGD--------------YVDGGQG*FGLWTQDDR------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
++GD +Y GC R+ A LK Q Y E + F V+ +IP G++ LS+ D+ EE+ +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P H +A + I Y++ T + G +VD + D R + CG I T + TEAE + + F + + GM + VFEDN+GAI+LA N ++ +KHIDV+HH +R+ + + + +V S QHAD LTK L F H +++++
Sbjct: 151 NLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDAD---YASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.200e-32 Identity = 104/296 (35.14%), Postives = 146/296 (49.32%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHT-----KEWGD---------YVDGGQG*FGLWTQDDRLECGDARITAA----------------GTEAESLPYRR*SRMYYF*D------RCSNYGM*LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILN 780
++G+ +++GC R+R+A ++ Q Y+ S+++RFNV + + IPA S ++ ++ E E P+RE VG+LMW A TRPDI+ AVRAVAR P +H KA KI YLL T K D YVD F D R G + A+ +EAE L + F + R S ++V EDNEGAI LA N +S R+KHIDV+HH +R+ ++ + V +V SE+QHAD+LTK L F H F L
Sbjct: 672 NLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDAD---FASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFGLG 957
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 135 bits (340), Expect = 5.960e-32 Identity = 98/296 (33.11%), Postives = 149/296 (50.34%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGDYVDGGQG*FGLWTQD------------DR-------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
++GD +Y GC R+ A LK Q Y E + F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L+W AT TRPDIA A+RAVAR+C +P H +A + I Y++ T + G + G+G + + + DR + CG I T + TEAE + + F + + GM + VFEDN+ A++LA N ++ +KHIDV+HH +R+ + + + +V S QHAD LTK L V F H F++NV
Sbjct: 842 NLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-VLSEFDQ------DEEVVSWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLG--ITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMNV 1128
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE) HSP 1 Score: 135 bits (340), Expect = 6.500e-32 Identity = 99/297 (33.33%), Postives = 141/297 (47.47%), Query Frame = 1
Query: 1 DMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWG--------------DYVDGGQG*FGLWTQDDR------LECGDARI----------TAAGTEAESLPYRR*SRMYYF*DRCSNY-----GM*-LNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPLDVKKFCKHAKFILNV 783
++G+ +Y GC RN++ L Q + + + + V +P +SGV+ LS D + E FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P L H A M I Y T +G Y D F D R + CG + T + TEAE + + F + + GM + VFEDN+GAI+LA N ++ +KHIDV+HH +R+ + + + V +V S Q AD LTK L F H F++N+
Sbjct: 1511 NLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADAD---FASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 1797 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig918.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig918.18.1 >prot_A-nodosum_M_contig918.18.1 ID=prot_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp MGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVback to top mRNA from alignment at A-nodosum_M_contig918:138940..139863+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig918.18.1 ID=mRNA_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=924bp|location=Sequence derived from alignment at A-nodosum_M_contig918:138940..139863+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig918:138940..139863+ >mRNA_A-nodosum_M_contig918.18.1 ID=mRNA_A-nodosum_M_contig918.18.1|Name=mRNA_A-nodosum_M_contig918.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig918:138940..139863+ (Ascophyllum nodosum dioecious)back to top |