prot_A-nodosum_M_contig9110.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig9110.1.1
Unique Name	prot_A-nodosum_M_contig9110.1.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	86

Homology

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.120e-25
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G  V+ S+WV K+K +   K+RLV  GW QVPG  CGGTFAPVCRLQ+IRM+  IAAE D +V   DV+TAF  AD+EE VF
Sbjct:  342 VPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVF 426

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.460e-24
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G+K + S+WV K K DG FK RLV  GW QVPG+ CG T+APVCRLQ+IRM+  I  + + E+   DV TAFF AD+ E VF
Sbjct:   90 VPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVF 174

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.890e-24
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G+K + SRWV K K DG FK RLV  GW QVPG+ CG T+APVCRLQ+IRM+  IA + + E+   DV TAF  AD+ E VF
Sbjct:  876 VPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVF 960

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.070e-23
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G+K   S+WV K K DG FK RLV  GW QVPG+GCG T+APVCRLQ+IRM+  IA + + E+   DV TAF   D+ E VF
Sbjct:  675 VPPGRKRTTSKWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVF 759

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.500e-22
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G+K + S+WV K K DG FK R+V  GW QVPG+ CG T+APVCR+Q++RM+  I  E +      DV TAF  AD++EEVF
Sbjct:  170 VPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVF 254

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.640e-22
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G+K + S+WV K K DG FK RLVV GW QVPG+  G TFAPVCRLQ+IRM+   A + + E+   DV TAF  AD+ E VF
Sbjct:   90 VPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVF 174

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.880e-21
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP  +K + S+WV K K DG FK R+V  GW QVPG+ CG T+APVCR+Q++RM+  I  E +      DV TAF  AD++EEVF
Sbjct: 1191 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVF 1275

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.880e-21
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP  +K + S+WV K K DG FK R+V  GW QVPG+ CG T+APVCR+Q++RM+  I  E +      DV TAF  AD++EEVF
Sbjct: 1356 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVF 1440

[Close]

BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.510e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 0

Query:    4 GQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            G+K   S+WV K K DG FK RLV  GW QVPG+ CG T+APVCRLQ+IRM+  IA + + E+   DV TAF  AD+ E++F
Sbjct:  522 GRKRTKSKWVFKRKEDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLF 603

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BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.470e-21
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0

Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 85
            VP G+K   S+WV K K DG FK RLV  GW Q PG+ CG T+APVCRLQ+IRM+  IA + + E+   D+ T F +AD+ E V+
Sbjct: 1029 VPPGRKRTKSKWVFKSKADGSFKGRLVAQGWNQGPGLHCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDMSTTFLHADILENVY 1113

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	4.120e-25	60.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KPN4_9PHAE	4.460e-24	56.47	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JIN1_9PHAE	6.890e-24	57.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K129_9PHAE	6.070e-23	56.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JME8_9PHAE	1.500e-22	52.94	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KWT4_9PHAE	2.640e-22	56.47	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	1.880e-21	51.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	1.880e-21	51.76	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KER0_9PHAE	2.510e-21	54.88	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JC75_9PHAE	3.470e-21	51.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..85 e-value: 1.2E-18 score: 67.6

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig9110	contig	A-nodosum_M_contig9110:14234..14491 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig9110.1.1	mRNA_A-nodosum_M_contig9110.1.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig9110 14234..14491 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig9110.1.1 ID=prot_A-nodosum_M_contig9110.1.1|Name=mRNA_A-nodosum_M_contig9110.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQ
NIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVFQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2