mRNA_A-nodosum_M_contig9110.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9110.1.1
Unique NamemRNA_A-nodosum_M_contig9110.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.120e-25
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G  V+ S+WV K+K +   K+RLV  GW QVPG  CGGTFAPVCRLQ+IRM+  IAAE D +V   DV+TAF  AD+EE VF
Sbjct:  342 VPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVF 426
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.460e-24
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G+K + S+WV K K DG FK RLV  GW QVPG+ CG T+APVCRLQ+IRM+  I  + + E+   DV TAFF AD+ E VF
Sbjct:   90 VPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVF 174
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.890e-24
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G+K + SRWV K K DG FK RLV  GW QVPG+ CG T+APVCRLQ+IRM+  IA + + E+   DV TAF  AD+ E VF
Sbjct:  876 VPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVF 960
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.070e-23
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G+K   S+WV K K DG FK RLV  GW QVPG+GCG T+APVCRLQ+IRM+  IA + + E+   DV TAF   D+ E VF
Sbjct:  675 VPPGRKRTTSKWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVF 759
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.500e-22
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G+K + S+WV K K DG FK R+V  GW QVPG+ CG T+APVCR+Q++RM+  I  E +      DV TAF  AD++EEVF
Sbjct:  170 VPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVF 254
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.640e-22
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G+K + S+WV K K DG FK RLVV GW QVPG+  G TFAPVCRLQ+IRM+   A + + E+   DV TAF  AD+ E VF
Sbjct:   90 VPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVF 174
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.880e-21
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP  +K + S+WV K K DG FK R+V  GW QVPG+ CG T+APVCR+Q++RM+  I  E +      DV TAF  AD++EEVF
Sbjct: 1191 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVF 1275
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.880e-21
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP  +K + S+WV K K DG FK R+V  GW QVPG+ CG T+APVCR+Q++RM+  I  E +      DV TAF  AD++EEVF
Sbjct: 1356 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVF 1440
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.510e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   10 GQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            G+K   S+WV K K DG FK RLV  GW QVPG+ CG T+APVCRLQ+IRM+  IA + + E+   DV TAF  AD+ E++F
Sbjct:  522 GRKRTKSKWVFKRKEDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLF 603
[Close]
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.470e-21
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQNIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVF 255
            VP G+K   S+WV K K DG FK RLV  GW Q PG+ CG T+APVCRLQ+IRM+  IA + + E+   D+ T F +AD+ E V+
Sbjct: 1029 VPPGRKRTKSKWVFKSKADGSFKGRLVAQGWNQGPGLHCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDMSTTFLHADILENVY 1113
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE4.120e-2560.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN4_9PHAE4.460e-2456.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE6.890e-2457.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE6.070e-2356.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE1.500e-2252.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KWT4_9PHAE2.640e-2256.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.880e-2151.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.880e-2151.76Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KER0_9PHAE2.510e-2154.88CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JC75_9PHAE3.470e-2151.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9110contigA-nodosum_M_contig9110:14234..14491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36914.XP_001527393.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size258
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.39e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size258
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870366.311625-CDS-A-nodosum_M_contig9110:14233..144911680870366.311625-CDS-A-nodosum_M_contig9110:14233..14491Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9110 14234..14491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9110.1.1prot_A-nodosum_M_contig9110.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9110 14234..14491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9110.1.1

>prot_A-nodosum_M_contig9110.1.1 ID=prot_A-nodosum_M_contig9110.1.1|Name=mRNA_A-nodosum_M_contig9110.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
VPAGQKVVNSRWVNKIKTDGLFKSRLVVLGWTQVPGIGCGGTFAPVCRLQ
NIRMMLDIAAELDYEVPMPDVQTAFFNADVEEEVFQ
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mRNA from alignment at A-nodosum_M_contig9110:14234..14491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9110.1.1 ID=mRNA_A-nodosum_M_contig9110.1.1|Name=mRNA_A-nodosum_M_contig9110.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig9110:14234..14491+ (Ascophyllum nodosum dioecious)
GTCCCTGCTGGACAAAAGGTGGTTAACTCACGCTGGGTCAACAAGATCAA
GACGGACGGTCTCTTCAAAAGTCGTCTGGTAGTGCTGGGATGGACACAGG
TACCCGGGATCGGCTGCGGCGGCACGTTCGCACCCGTCTGTAGACTGCAA
AACATCCGCATGATGCTGGACATCGCAGCCGAGCTCGACTACGAGGTGCC
CATGCCGGACGTGCAAACAGCGTTCTTCAACGCTGACGTCGAGGAGGAGG
TTTTTCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9110:14234..14491+

>mRNA_A-nodosum_M_contig9110.1.1 ID=mRNA_A-nodosum_M_contig9110.1.1|Name=mRNA_A-nodosum_M_contig9110.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig9110:14234..14491+ (Ascophyllum nodosum dioecious)
GTCCCTGCTGGACAAAAGGTGGTTAACTCACGCTGGGTCAACAAGATCAA
GACGGACGGTCTCTTCAAAAGTCGTCTGGTAGTGCTGGGATGGACACAGG
TACCCGGGATCGGCTGCGGCGGCACGTTCGCACCCGTCTGTAGACTGCAA
AACATCCGCATGATGCTGGACATCGCAGCCGAGCTCGACTACGAGGTGCC
CATGCCGGACGTGCAAACAGCGTTCTTCAACGCTGACGTCGAGGAGGAGG
TTTTTCAA
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