prot_A-nodosum_M_contig903.10.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig903.10.2
Unique Nameprot_A-nodosum_M_contig903.10.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length128
Homology
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BLAST of mRNA_A-nodosum_M_contig903.10.2 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 6.720e-24
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 0 
Query:   17 RQPEALLGNIEARRAQEVERCAAKGWKSALVCLENMLNGGVSPGTRAYNIALKACAEAGEWDRAAALLRDIRACGVAPDAAVVSEV---SENVDIHE 110
            R+P A +   E +RA EV++CA KGWKSAL+CL NM  GGV+PG+ AYN+ALKACA AGEW RAAAL+ D++  G  PD  +V+E+    +NV + E
Sbjct:   48 RRPTAAM---ELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVME 141
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BLAST of mRNA_A-nodosum_M_contig903.10.2 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.420e-23
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 0 
Query:   17 RQPEALLGNIEARRAQEVERCAAKGWKSALVCLENMLNGGVSPGTRAYNIALKACAEAGEWDRAAALLRDIRACGVAPDAAVVSEV 102
            R+P A +   E RRA EV++CA KGWKSAL+CL NM  GGV+PG+ AYN+ALKACA AGEW RAAAL+ D++  G  PD  +V+E+
Sbjct:   48 RRPTAAM---ELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEI 130
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig903.10.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7H2_ECTSI6.720e-2454.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGB2_9PHAE1.420e-2359.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 63..96
e-value: 1.3E-6
score: 26.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 60..94
score: 10.194067
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 36..123
e-value: 7.9E-12
score: 47.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig903contigA-nodosum_M_contig903:70264..72581 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig903.10.2mRNA_A-nodosum_M_contig903.10.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig903 70217..73244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig903.10.2 ID=prot_A-nodosum_M_contig903.10.2|Name=mRNA_A-nodosum_M_contig903.10.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
MLEPRAGAARSIGGSRRQPEALLGNIEARRAQEVERCAAKGWKSALVCLE
NMLNGGVSPGTRAYNIALKACAEAGEWDRAAALLRDIRACGVAPDAAVVS
EVSENVDIHEATASGNPEGKHDRSWRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf