mRNA_A-nodosum_M_contig903.10.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig903.10.2
Unique NamemRNA_A-nodosum_M_contig903.10.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig903.10.2 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.600e-21
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 3 
Query:   96 RQPEALLGNIEARRAQEVERCAAKGWKSALVCLENMLNGGVSPGTRAYNIALKACAEAGEWDRAAALLRDIRACGVAPDAAVVSEV---SENVDIHE 377
            R+P A +   E +RA EV++CA KGWKSAL+CL NM  GGV+PG+ AYN+ALKACA AGEW RAAAL+ D++  G  PD  +V+E+    +NV + E
Sbjct:   48 RRPTAAM---ELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVME 141
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BLAST of mRNA_A-nodosum_M_contig903.10.2 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.710e-21
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 3 
Query:   96 RQPEALLGNIEARRAQEVERCAAKGWKSALVCLENMLNGGVSPGTRAYNIALKACAEAGEWDRAAALLRDIRACGVAPDAAVVSEV 353
            R+P A +   E RRA EV++CA KGWKSAL+CL NM  GGV+PG+ AYN+ALKACA AGEW RAAAL+ D++  G  PD  +V+E+
Sbjct:   48 RRPTAAM---ELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEI 130
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig903.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7H2_ECTSI2.600e-2154.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGB2_9PHAE5.710e-2159.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig903contigA-nodosum_M_contig903:70217..73244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1094
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000260.1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870346.993052-UTR-A-nodosum_M_contig903:70216..702631680870346.993052-UTR-A-nodosum_M_contig903:70216..70263Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig903 70217..70263 +
1680870347.0306017-UTR-A-nodosum_M_contig903:72581..732441680870347.0306017-UTR-A-nodosum_M_contig903:72581..73244Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig903 72582..73244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870347.0038686-CDS-A-nodosum_M_contig903:70263..703831680870347.0038686-CDS-A-nodosum_M_contig903:70263..70383Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig903 70264..70383 +
1680870347.0181587-CDS-A-nodosum_M_contig903:72317..725811680870347.0181587-CDS-A-nodosum_M_contig903:72317..72581Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig903 72318..72581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig903.10.2prot_A-nodosum_M_contig903.10.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig903 70264..72581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig903.10.2

>prot_A-nodosum_M_contig903.10.2 ID=prot_A-nodosum_M_contig903.10.2|Name=mRNA_A-nodosum_M_contig903.10.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
MLEPRAGAARSIGGSRRQPEALLGNIEARRAQEVERCAAKGWKSALVCLE
NMLNGGVSPGTRAYNIALKACAEAGEWDRAAALLRDIRACGVAPDAAVVS
EVSENVDIHEATASGNPEGKHDRSWRP*
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mRNA from alignment at A-nodosum_M_contig903:70217..73244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig903.10.2 ID=mRNA_A-nodosum_M_contig903.10.2|Name=mRNA_A-nodosum_M_contig903.10.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3028bp|location=Sequence derived from alignment at A-nodosum_M_contig903:70217..73244+ (Ascophyllum nodosum dioecious)
AGGTAAACGTTAACGTCCTGGCCCGGGGCAGGGGAAGGATTTTCCCGATG
CTGGAGCCACGAGCGGGCGCAGCAAGGAGTATCGGAGGCTCCCGCCGCCA
GCCGGAGGCCTTGCTAGGAAACATCGAGGCCCGTCGTGCCCAGGAGGTCG
AGCGGTGTGCCGCGAAGGTATAACATCACTTCTGATGGAAACTACAATAT
TCTGGTTCAAGCCAGTTCGGGGGGGGGGGGACATTCGGCTAGAATTTCTG
GCCAGAACAAAATTCTGGAACGAAGTCATCCGGATTTTCTATCAGGGATT
TGTGTTTCCGAGCCGATCGCCCCGGTAGCTCAGTTGGTAACCTCGTTACC
TTCTGACACGTTGGGACGTGAGTTCGAATCCCGGTAGCTGGGATTTTCCT
CACAGAATAAATTAAAAAAAGAATGCCCACAAGTGGAGAACGATTACCGG
TAAATCGTTAGTACACAACAAAATTCGACTTCACGGTCGACGAGGGAAAG
GAACGGCTGAATCCTTCTCGCGAGAAAAAATAAGGCATGCACCGCAGAAG
GAAGGTGGATGAAAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCT
GGTGCGTCCAACGAACCTGACGTCCAGAATGAGTGGGAAAAGAATACACA
CAAACACCATCCGAGCCTGGTGGGTGCACACACGAAATGATGCGGCGCAA
CCTTTGACAAGGGGAGGGGGGACACTTTCGGATGGAATTTGATTGGTCGG
AGCGAACTTTTGGAACAGCTAACACCAAGTCATGCGGATTTCTTGTCAAG
GATCTTCAGAGAAAAATCTGAACCAACGCAACTAGACCTTCCGAGCATCC
CCCAGTCAGGGGGAGTGCTTTATGAGTACTGTCCTGTATGTCTTAAATAC
GGAACCCGAAAATTACAATCGTTGCCGAAACGTTTCGACCCTCCTAGCCT
GGTGGGTGCACACACGAAATGGTGGCATTTTTTTTTTTTCCTAGAATTAC
TTCGTTTCCCGACCAGAAGGGGCAATGCGCAACAGCCGGAACTTTCAACA
CTGCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTTAT
TGGTCCATGGTGACCTGCCAAGGCAACACTCGTTCGGAACTACCTTGAGG
TTTACTGGCTCCGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACG
CAAATGCGTGACCAGATAAACTTTGGACTGACCTGATGGGGTATGGCGGG
TTTAACTAAATAAATGGACGCCGCCGCGGAATTCGGGAGGAATCCCGTAA
ATAAGCACCATATTCAGCCGGAGTATGGAGATGAGCAGGCTGACGCGGGA
CGGGACTGCCGAACCCGTCTCGCGAGGCCAAATTTTCAGGCGCGAACGCG
GACAGGGAAATATTCACAGCTGACCACGAGCAGGATTGGCAGCCTCACCC
GGTTGATCCATGCTCTTGCTATATTTGTGACCATACATACATGCATGCAT
ACATACATACATAACTACTATATTATTACACTATTTAATAGAATGCAGTA
GTGTACTGTAGTGGTGGTATTGGTAAATAGTTGGTTGTACCATAACCTTT
ATAACTATTTTCGAGTGTGCCGCCCCAAGTGAACTCTGCTCTTTCCCCCC
CTTGACGCGCTGCTACTTCGTTCACCGCCTCCGTGGTACAAGCAGTGCTT
GTTGGGGACAGCAGCCAATCCCCACCAGCACTCGAAGCATCGATCGAACA
CCAAACAGCAGTCAGTGTCTCCTGTCCTGAAGGGGTCATGCTCCAGTGCT
ACCGTACAGCAGCAGCAGCAGTAATCGAGAATCTGCATTAGTATCCAGCA
CAGCCACAGAGGCTACCGAAGAAACCACGGTCTGACGATGCGTATTCGTG
GAATGAATCCGTCGGTAGTCCGTCGGTACCTCGCTGCAACCAAACGTGCC
TCTACCACTTTTACAGTGCTTCAAGAGTGTTCGTATTTTCCTCTACGGAG
GAAACGAGAGCCTTTCTACTTTAAAAAAAAGCCAGATGAAACCTGAAACC
CCTTTATCTCTCCCTCATACTATTGTGCGGTTGTACACTCTGCGCTCAAA
GGGTTGGAAGAGCGCGCTGGTTTGCCTAGAAAATATGCTCAACGGAGGCG
TTTCCCCTGGGACGCGGGCGTACAACATCGCCCTGAAGGCATGCGCTGAG
GCAGGGGAGTGGGACCGCGCCGCGGCACTGTTGCGCGACATTCGTGCCTG
CGGCGTAGCGCCAGACGCGGCCGTCGTGTCCGAGGTTAGCGAGAACGTCG
ACATCCACGAGGCAACAGCGAGTGGAAACCCTGAGGGGAAGCACGATCGC
TCCTGGCGACCTTGATTCTCTTCCAACGCGTGCGGCGTTCCGCTCGAACC
GGCGTCGGTTGCTCGTGGCTCGAAGGCGCGGACGCAACGTGCCACAGCCG
ATGCATGCACACAATCTAGATGCATGGTTTTCGCCGGTCTGCTGTGGTCG
CTTCCCTCGCGAGTCGTCCGCGGGGATGTCAGTACCGATGAAGATGGCCG
AGTGTTTTCTGAAAGCATAAACCAGCTGCCCGCTTTCCACGTTAAACCTA
CTATGATACTATACTACTTTTAAATAACAACTGACAAGCTTGTGCATTCG
CCGATGGCGTAAAGTTGAGTACGAAATGTATCAGAGTGATGGAACTTAGT
TGTGTAAACAATGCTGTACACTGCAAACTGTACGTGTTGTGCATAATAAG
ATAGAGGAAGACATTATAGTCCAAGGTCCGCCGGGTTCCGCTATCAGGGA
AGGGTCGACACTGGCACAGCTTTTGGGCGCCGTCGGAGGGGTCGTTGGTT
GCTATTGTTACCAGTGGTTCGACCACGACGCGTCTCGGCGGTGAGGGGCT
TGCTGGTTCCAGGACTTGGAGGGTGGCACCGACAACGCTTACAGAATACA
AGTACACCAATCAAGAACGCTTGCAGCATGCAAGTACACCAATCAAGTTT
GTTTAAACAAATACACGCTCACAAACAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig903:70217..73244+

>mRNA_A-nodosum_M_contig903.10.2 ID=mRNA_A-nodosum_M_contig903.10.2|Name=mRNA_A-nodosum_M_contig903.10.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig903:70217..73244+ (Ascophyllum nodosum dioecious)
ATGCTGGAGCCACGAGCGGGCGCAGCAAGGAGTATCGGAGGCTCCCGCCG
CCAGCCGGAGGCCTTGCTAGGAAACATCGAGGCCCGTCGTGCCCAGGAGG
TCGAGCGGTGTGCCGCGAAGGGTTGGAAGAGCGCGCTGGTTTGCCTAGAA
AATATGCTCAACGGAGGCGTTTCCCCTGGGACGCGGGCGTACAACATCGC
CCTGAAGGCATGCGCTGAGGCAGGGGAGTGGGACCGCGCCGCGGCACTGT
TGCGCGACATTCGTGCCTGCGGCGTAGCGCCAGACGCGGCCGTCGTGTCC
GAGGTTAGCGAGAACGTCGACATCCACGAGGCAACAGCGAGTGGAAACCC
TGAGGGGAAGCACGATCGCTCCTGGCGACCTTGA
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