prot_A-nodosum_M_contig894.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig894.18.1
Unique Nameprot_A-nodosum_M_contig894.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length35
Homology
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BLAST of mRNA_A-nodosum_M_contig894.18.1 vs. uniprot
Match: D7G7W3_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.360e-14
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0 
Query:    1 MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPW 34
            MDARSCAPEITDD+FEAEVLDE+RPVLVFFRA W
Sbjct:    1 MDARSCAPEITDDSFEAEVLDEDRPVLVFFRAAW 34
[Close]
BLAST of mRNA_A-nodosum_M_contig894.18.1 vs. uniprot
Match: A0A6H5L318_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L318_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.730e-14
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0 
Query:    1 MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPW 34
            MDA SCAPEITDD+FEAEVLDE+RPVLVFFRAPW
Sbjct:   80 MDASSCAPEITDDSFEAEVLDEDRPVLVFFRAPW 113
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig894.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W3_ECTSI1.360e-1491.18Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L318_9PHAE3.730e-1491.18Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 7..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig894contigA-nodosum_M_contig894:206746..206850 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig894.18.1mRNA_A-nodosum_M_contig894.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig894 206364..206850 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig894.18.1 ID=prot_A-nodosum_M_contig894.18.1|Name=mRNA_A-nodosum_M_contig894.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=35bp
MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf