mRNA_A-nodosum_M_contig894.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig894.18.1
Unique NamemRNA_A-nodosum_M_contig894.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig894.18.1 vs. uniprot
Match: D7G7W3_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W3_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.090e-14
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPW*GP 111
            MDARSCAPEITDD+FEAEVLDE+RPVLVFFRA W GP
Sbjct:    1 MDARSCAPEITDDSFEAEVLDEDRPVLVFFRAAWCGP 37
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BLAST of mRNA_A-nodosum_M_contig894.18.1 vs. uniprot
Match: A0A6H5L318_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L318_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.800e-14
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPW*GP----RTFEYECL**FCSRFAWILVCTIKN---VLQ*LYTNTGWFSMFETRKA 246
            MDA SCAPEITDD+FEAEVLDE+RPVLVFFRAPW GP         E +    S+   + +CT +N   V +    N     +F  RK+
Sbjct:   80 MDASSCAPEITDDSFEAEVLDEDRPVLVFFRAPWCGPCRMVGPIVDEVIADHGSKLKVLELCTDENPKTVAEFKIRNIPTLMLFSDRKS 168
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig894.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W3_ECTSI4.090e-1489.19Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L318_9PHAE8.800e-1448.31Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig894contigA-nodosum_M_contig894:206364..206850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7W3
PFAMsThioredoxin
Model size487
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006810,GO:0006950,GO:0006979,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009657,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0010496,GO:0010497,GO:0010646,GO:0010647,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016999,GO:0017001,GO:0017144,GO:0019222,GO:0019725,GO:0019904,GO:0030234,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033554,GO:0034357,GO:0034599,GO:0042221,GO:0042592,GO:0042651,GO:0042737,GO:0042743,GO:0042744,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0048046,GO:0048509,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051716,GO:0055035,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071840,GO:0071944,GO:0072593,GO:0080090,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Exons1
Evalue2.22e-15
EggNOG OGsCOG0526@1|root,KOG0910@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-06_000090.1
Descriptionglycerol ether metabolic process
Cds size105
COG categoryO
BiGG ReactioniRC1080.CRv4_Au5_s14_g5492_t1
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870321.9585955-UTR-A-nodosum_M_contig894:206363..2067451680870321.9585955-UTR-A-nodosum_M_contig894:206363..206745Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig894 206364..206745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870321.974233-CDS-A-nodosum_M_contig894:206745..2068501680870321.974233-CDS-A-nodosum_M_contig894:206745..206850Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig894 206746..206850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig894.18.1prot_A-nodosum_M_contig894.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig894 206746..206850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig894.18.1

>prot_A-nodosum_M_contig894.18.1 ID=prot_A-nodosum_M_contig894.18.1|Name=mRNA_A-nodosum_M_contig894.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=35bp
MDARSCAPEITDDTFEAEVLDEERPVLVFFRAPW*
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mRNA from alignment at A-nodosum_M_contig894:206364..206850-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig894.18.1 ID=mRNA_A-nodosum_M_contig894.18.1|Name=mRNA_A-nodosum_M_contig894.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at A-nodosum_M_contig894:206364..206850- (Ascophyllum nodosum dioecious)
ATGGACGCTAGAAGTTGCGCGCCAGAGATCACGGACGATACGTTTGAGGC
TGAAGTTCTTGACGAGGAGCGACCCGTTCTAGTTTTCTTTAGAGCGCCGT
GGTGAGGTCCACGTACGTTCGAGTACGAATGCCTCTAATAATTTTGTTCG
CGTTTTGCATGGATACTCGTATGTACTATCAAAAATGTGCTACAGTAGCT
CTATACAAATACTGGCTGGTTCAGCATGTTTGAGACACGCAAAGCCCAAC
AACCCGAATACACAAAAACTGCAAGTATACAAACATGGCTGTACAAGCAG
TCCATACATCAGAAATACAGAACGCAAGGCTCCATGGTGCCACACTGAGC
AGTCCGGGGAAGCCTTTCCTCTTCCCACCCAAGAAAAAGTACCCATATTC
CATCTATACATTTATTTTAGTCAGCGTATGCTTATTCTCGGAGATACAGC
TTAGACAAGGGGTGGTGCGGTGCGGCTTGGATTATTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig894:206364..206850-

>mRNA_A-nodosum_M_contig894.18.1 ID=mRNA_A-nodosum_M_contig894.18.1|Name=mRNA_A-nodosum_M_contig894.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=105bp|location=Sequence derived from alignment at A-nodosum_M_contig894:206364..206850- (Ascophyllum nodosum dioecious)
ATGGACGCTAGAAGTTGCGCGCCAGAGATCACGGACGATACGTTTGAGGC
TGAAGTTCTTGACGAGGAGCGACCCGTTCTAGTTTTCTTTAGAGCGCCGT
GGTGA
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