prot_A-nodosum_M_contig8922.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8922.1.1
Unique Nameprot_A-nodosum_M_contig8922.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length265
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8922.1.1 vs. uniprot
Match: A0A6H5JXW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.160e-11
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 0 
Query:    6 SVKTNPLVDNEDVLRHAMPFVG-SEGYLYVGGVSTRWRDAW--GDLPRETSLKAAVQSVPRLSLAKDN---------GCR----WDDITFMHVAETGNLDVVRYAR 95
            +++ NPL+D +D+LRH +PFV  +EGYL+V GV++ W  AW  G LP+ T L   V+S  RL+ A            G      WD+      A  G+L  ++YAR
Sbjct:   31 TLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYRAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGSTSGGASTPWVWDESVCRRAAAGGHLGALKYAR 136
[Close]
BLAST of mRNA_A-nodosum_M_contig8922.1.1 vs. uniprot
Match: D7FVI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.060e-10
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0 
Query:    6 SVKTNPLVDNEDVLRHAMPFVG-SEGYLYVGGVSTRWRDAW--GDLPRETSLKAAVQSVPRLSLAKDN----GCR-------------WDDITFMHVAETGNLDVVRYAR 95
            +++ NPL+D +D+LRH +PFV  +EGYL+V GV++ W  AW  G LP+ T L   V+S  RL+ A       G               WD+      A  G+L  ++YAR
Sbjct:   29 TLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLGTGGXXXXXXXXXASTPWVWDESVCRRAAAGGHLGALKYAR 138
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8922.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXW6_9PHAE5.160e-1137.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVI4_ECTSI2.060e-1036.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 52..263
e-value: 1.3E-12
score: 49.0
NoneNo IPR availablePANTHERPTHR46586ANKYRIN REPEAT-CONTAINING PROTEINcoord: 68..157
coord: 161..262
NoneNo IPR availablePANTHERPTHR46586:SF3ANKYRIN REPEAT-CONTAINING PROTEINcoord: 68..157
coord: 161..262
NoneNo IPR availableSUPERFAMILY140860Pseudo ankyrin repeat-likecoord: 132..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8922contigA-nodosum_M_contig8922:17440..18556 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8922.1.1mRNA_A-nodosum_M_contig8922.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8922 17440..18556 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8922.1.1 ID=prot_A-nodosum_M_contig8922.1.1|Name=mRNA_A-nodosum_M_contig8922.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=265bp
GDTAQSVKTNPLVDNEDVLRHAMPFVGSEGYLYVGGVSTRWRDAWGDLPR
ETSLKAAVQSVPRLSLAKDNGCRWDDITFMHVAETGNLDVVRYARAQGCH
WDDKSCASASVGGHLAVLKWLRANGCPWNEATCTQAASSGNLEVLKWCRA
NGCPWNERTPSCAARGGFLDILKWCREEGCPWDERVCASAASSGRLDILR
WCRENGCPWNEFTCSSAAAGGHMSILEWSRANGCPWDERTCQKAAAGGHD
AVLEWCRANGCPET*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf