mRNA_A-nodosum_M_contig8922.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8922.1.1
Unique NamemRNA_A-nodosum_M_contig8922.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8922.1.1 vs. uniprot
Match: A0A6H5JXW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.160e-11
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   16 SVKTNPLVDNEDVLRHAMPFVG-SEGYLYVGGVSTRWRDAW--GDLPRETSLKAAVQSVPRLSLAKDN---------GCR----WDDITFMHVAETGNLDVVRYAR 285
            +++ NPL+D +D+LRH +PFV  +EGYL+V GV++ W  AW  G LP+ T L   V+S  RL+ A            G      WD+      A  G+L  ++YAR
Sbjct:   31 TLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYRAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGSTSGGASTPWVWDESVCRRAAAGGHLGALKYAR 136
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BLAST of mRNA_A-nodosum_M_contig8922.1.1 vs. uniprot
Match: D7FVI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.060e-10
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:   16 SVKTNPLVDNEDVLRHAMPFVG-SEGYLYVGGVSTRWRDAW--GDLPRETSLKAAVQSVPRLSLAKDN----GCR-------------WDDITFMHVAETGNLDVVRYAR 285
            +++ NPL+D +D+LRH +PFV  +EGYL+V GV++ W  AW  G LP+ T L   V+S  RL+ A       G               WD+      A  G+L  ++YAR
Sbjct:   29 TLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLGTGGXXXXXXXXXASTPWVWDESVCRRAAAGGHLGALKYAR 138
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8922.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXW6_9PHAE5.160e-1137.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVI4_ECTSI2.060e-1036.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8922contigA-nodosum_M_contig8922:17440..18556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size795
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.95e-15
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870320.211443-CDS-A-nodosum_M_contig8922:17439..178041680870320.211443-CDS-A-nodosum_M_contig8922:17439..17804Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8922 17440..17804 +
1680870320.222045-CDS-A-nodosum_M_contig8922:18126..185561680870320.222045-CDS-A-nodosum_M_contig8922:18126..18556Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8922 18127..18556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8922.1.1prot_A-nodosum_M_contig8922.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8922 17440..18556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8922.1.1

>prot_A-nodosum_M_contig8922.1.1 ID=prot_A-nodosum_M_contig8922.1.1|Name=mRNA_A-nodosum_M_contig8922.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=265bp
GDTAQSVKTNPLVDNEDVLRHAMPFVGSEGYLYVGGVSTRWRDAWGDLPR
ETSLKAAVQSVPRLSLAKDNGCRWDDITFMHVAETGNLDVVRYARAQGCH
WDDKSCASASVGGHLAVLKWLRANGCPWNEATCTQAASSGNLEVLKWCRA
NGCPWNERTPSCAARGGFLDILKWCREEGCPWDERVCASAASSGRLDILR
WCRENGCPWNEFTCSSAAAGGHMSILEWSRANGCPWDERTCQKAAAGGHD
AVLEWCRANGCPET*
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mRNA from alignment at A-nodosum_M_contig8922:17440..18556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8922.1.1 ID=mRNA_A-nodosum_M_contig8922.1.1|Name=mRNA_A-nodosum_M_contig8922.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1117bp|location=Sequence derived from alignment at A-nodosum_M_contig8922:17440..18556+ (Ascophyllum nodosum dioecious)
GGTGACACTGCTCAATCTGTCAAAACCAATCCCCTCGTGGATAACGAAGA
CGTGCTACGGCATGCAATGCCGTTTGTCGGTAGTGAAGGCTACCTCTACG
TGGGTGGCGTTTCCACTCGTTGGAGAGATGCCTGGGGAGATCTCCCCAGG
GAGACTTCCTTGAAGGCCGCTGTGCAGTCAGTACCACGGCTCTCGTTGGC
CAAGGACAACGGGTGTCGATGGGACGACATCACATTCATGCACGTGGCCG
AAACAGGGAACCTGGACGTGGTAAGGTACGCTCGTGCTCAAGGCTGTCAT
TGGGACGATAAATCCTGCGCTTCAGCTTCTGTCGGGGGACATCTCGCCGT
GCTGAAATGGCTCAGGTCAAACGGTGCCCTGGGGTAGCGACGTTTGCGCG
TCGGCCGCCATTGGGGGCCATCTGGAGCTCCTCCAGTGGTGCCGAGCTCA
AGGTTGCCCATGGGACAGCACGACCGTAGAGTATGCAGCTTGGGGGGGGC
ATCTCGACGTGTGCAAGTGGGCGAGAGCAAACGGTTGCCCTCGGGATTTC
ATGGCATGCATGTGGGCTGCGAGCTGTGGGCACCTAGATGTACTGAAATG
GCTGAAGGACGACGAATGCCCCTGGGACGACGCAACGGCGCTGGCGATCG
CGGCGGCAGGTCAGTGGGAGATTCTCAAATGGGCCAGGGCCAACGGCTGC
CCGTGGAACGAGGCCACGTGCACGCAGGCCGCTAGTTCGGGTAACCTAGA
GGTCTTGAAGTGGTGTCGCGCCAACGGTTGTCCCTGGAATGAGCGCACAC
CTTCCTGTGCGGCTCGCGGGGGGTTCCTGGACATTCTTAAATGGTGTCGG
GAGGAGGGCTGCCCTTGGGATGAAAGGGTCTGCGCGAGTGCCGCCAGCAG
CGGTCGTCTAGATATTCTTCGATGGTGCCGCGAGAACGGCTGCCCGTGGA
ACGAGTTCACCTGCTCCAGCGCGGCTGCCGGAGGGCATATGAGCATTCTG
GAGTGGAGTCGGGCGAACGGCTGCCCGTGGGATGAACGCACCTGCCAAAA
GGCGGCTGCAGGAGGGCACGATGCTGTGTTGGAGTGGTGCAGGGCCAACG
GGTGCCCAGAGACCTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8922:17440..18556+

>mRNA_A-nodosum_M_contig8922.1.1 ID=mRNA_A-nodosum_M_contig8922.1.1|Name=mRNA_A-nodosum_M_contig8922.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=795bp|location=Sequence derived from alignment at A-nodosum_M_contig8922:17440..18556+ (Ascophyllum nodosum dioecious)
GGTGACACTGCTCAATCTGTCAAAACCAATCCCCTCGTGGATAACGAAGA
CGTGCTACGGCATGCAATGCCGTTTGTCGGTAGTGAAGGCTACCTCTACG
TGGGTGGCGTTTCCACTCGTTGGAGAGATGCCTGGGGAGATCTCCCCAGG
GAGACTTCCTTGAAGGCCGCTGTGCAGTCAGTACCACGGCTCTCGTTGGC
CAAGGACAACGGGTGTCGATGGGACGACATCACATTCATGCACGTGGCCG
AAACAGGGAACCTGGACGTGGTAAGGTACGCTCGTGCTCAAGGCTGTCAT
TGGGACGATAAATCCTGCGCTTCAGCTTCTGTCGGGGGACATCTCGCCGT
GCTGAAATGGCTCAGGGCCAACGGCTGCCCGTGGAACGAGGCCACGTGCA
CGCAGGCCGCTAGTTCGGGTAACCTAGAGGTCTTGAAGTGGTGTCGCGCC
AACGGTTGTCCCTGGAATGAGCGCACACCTTCCTGTGCGGCTCGCGGGGG
GTTCCTGGACATTCTTAAATGGTGTCGGGAGGAGGGCTGCCCTTGGGATG
AAAGGGTCTGCGCGAGTGCCGCCAGCAGCGGTCGTCTAGATATTCTTCGA
TGGTGCCGCGAGAACGGCTGCCCGTGGAACGAGTTCACCTGCTCCAGCGC
GGCTGCCGGAGGGCATATGAGCATTCTGGAGTGGAGTCGGGCGAACGGCT
GCCCGTGGGATGAACGCACCTGCCAAAAGGCGGCTGCAGGAGGGCACGAT
GCTGTGTTGGAGTGGTGCAGGGCCAACGGGTGCCCAGAGACCTAA
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