prot_A-nodosum_M_contig892.6.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig892.6.2
Unique Nameprot_A-nodosum_M_contig892.6.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length346
Homology
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BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.420e-21
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 0 
Query:  261 ETRQAKIARYLAKRNRRCWTK--ASSYESRKKVANGRPRHKGRFLPVVSDFIPIAELQRRQRAMMKEMQEKAARA 333
            + R+ K+ARYLAK+ RRCW+K  ASSY+SR++VAN RPRHKGRFLP+ S+F+PIAELQRRQRA+M +M+EKAA A
Sbjct:  255 QVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAAA 329
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BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.820e-21
Identity = 51/73 (69.86%), Postives = 65/73 (89.04%), Query Frame = 0 
Query:  261 ETRQAKIARYLAKRNRRCWTK--ASSYESRKKVANGRPRHKGRFLPVVSDFIPIAELQRRQRAMMKEMQEKAA 331
            + R+ K+ARYLAK+ RRCW+K  ASSY+SR++VAN RPRHKGRFLP+ S+F+PIAELQRRQRA+M +M+EKAA
Sbjct:  256 QVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAA 328
[Close]
BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.160e-20
Identity = 48/73 (65.75%), Postives = 63/73 (86.30%), Query Frame = 0 
Query:  261 ETRQAKIARYLAKRNRRCWTKASSYESRKKVANGRPRHKGRFLPVVSDFIPIAELQRRQRAMMKEMQEKAARA 333
            + R+ K+ARYLAK+ RR W+KAS Y+SR++VAN RPRHKGRFLP+ S+F+PIAE+QRRQR +M +M+EKAA A
Sbjct:  303 QVRRQKVARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMREKAAAA 375
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIC1_ECTSI1.420e-2169.33CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE2.820e-2169.86CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KZS0_9PHAE5.160e-2065.75CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 312..336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..39
NoneNo IPR availablePANTHERPTHR31319:SF77ZINC FINGER PROTEIN CONSTANS-LIKE 4coord: 116..302
IPR010402CCT domainPFAMPF06203CCTcoord: 263..303
e-value: 1.8E-16
score: 60.0
IPR010402CCT domainPROSITEPS51017CCTcoord: 263..305
score: 11.617705
IPR045281Zinc finger protein CONSTANS-likePANTHERPTHR31319ZINC FINGER PROTEIN CONSTANS-LIKE 4coord: 116..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig892contigA-nodosum_M_contig892:93306..94343 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig892.6.2mRNA_A-nodosum_M_contig892.6.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig892 91569..95171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig892.6.2 ID=prot_A-nodosum_M_contig892.6.2|Name=mRNA_A-nodosum_M_contig892.6.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp
MEYFGDPATLMDEDEMALNVWGPLSSGALQSNPAFEENKSGSGKASAGFA
AAEPGEPQPMDSNSGLGGDQGDAGNIADGIDDFLDNFLVLAGSEPGSETD
GMKIPEGDLDFAWLDNFDDLPSPSSPISEIAVSCASRENVSSLEDLSLAA
VLSVKPPERELTPAAAEAAVSAAAEAAVSAAAEAAVSAAAEAASAPIDPV
ACGALAQPYDGGLSMVAPSATSAADGEGDGTGRYITVERAIPRRDITIDE
GGGYALMNRGETRQAKIARYLAKRNRRCWTKASSYESRKKVANGRPRHKG
RFLPVVSDFIPIAELQRRQRAMMKEMQEKAARADQEACAWSESVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
IPR045281CONSTANS-like