mRNA_A-nodosum_M_contig892.6.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig892.6.2
Unique NamemRNA_A-nodosum_M_contig892.6.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.130e-20
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 2 
Query: 1607 ETRQAKIARYLAKRNRRCWTK--ASSYESRKKVANGRPRHKGRFLPVVSDFIPIAELQRRQRAMMKEMQEKAARA 1825
            + R+ K+ARYLAK+ RRCW+K  ASSY+SR++VAN RPRHKGRFLP+ S+F+PIAELQRRQRA+M +M+EKAA A
Sbjct:  255 QVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAAA 329
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BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.000e-20
Identity = 51/73 (69.86%), Postives = 65/73 (89.04%), Query Frame = 2 
Query: 1607 ETRQAKIARYLAKRNRRCWTK--ASSYESRKKVANGRPRHKGRFLPVVSDFIPIAELQRRQRAMMKEMQEKAA 1819
            + R+ K+ARYLAK+ RRCW+K  ASSY+SR++VAN RPRHKGRFLP+ S+F+PIAELQRRQRA+M +M+EKAA
Sbjct:  256 QVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAA 328
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BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.010e-18
Identity = 48/73 (65.75%), Postives = 63/73 (86.30%), Query Frame = 2 
Query: 1607 ETRQAKIARYLAKRNRRCWTKASSYESRKKVANGRPRHKGRFLPVVSDFIPIAELQRRQRAMMKEMQEKAARA 1825
            + R+ K+ARYLAK+ RR W+KAS Y+SR++VAN RPRHKGRFLP+ S+F+PIAE+QRRQR +M +M+EKAA A
Sbjct:  303 QVRRQKVARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMREKAAAA 375
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig892.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIC1_ECTSI3.130e-2069.33CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE6.000e-2069.86CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KZS0_9PHAE1.010e-1865.75CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig892contigA-nodosum_M_contig892:91569..95171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3827.XP_004502760.1
PFAMsCCT,Response_reg
Model size2692
Max annot lvl35493|Streptophyta
KEGG koko:K12130
KEGG Pathwayko04712,map04712
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.71e-05
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37R8H@33090|Viridiplantae,3G75E@35493|Streptophyta,4JK8I@91835|fabids
DescriptionTwo-component response regulator-like
Cds size1038
COG categoryK
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870317.6032572-UTR-A-nodosum_M_contig892:91568..920171680870317.6032572-UTR-A-nodosum_M_contig892:91568..92017Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 91569..92017 +
1680870317.6156096-UTR-A-nodosum_M_contig892:92928..933051680870317.6156096-UTR-A-nodosum_M_contig892:92928..93305Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 92929..93305 +
1680870317.6444314-UTR-A-nodosum_M_contig892:94343..951711680870317.6444314-UTR-A-nodosum_M_contig892:94343..95171Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig892 94344..95171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870317.6319177-CDS-A-nodosum_M_contig892:93305..943431680870317.6319177-CDS-A-nodosum_M_contig892:93305..94343Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig892 93306..94343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig892.6.2prot_A-nodosum_M_contig892.6.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig892 93306..94343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig892.6.2

>prot_A-nodosum_M_contig892.6.2 ID=prot_A-nodosum_M_contig892.6.2|Name=mRNA_A-nodosum_M_contig892.6.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp
MEYFGDPATLMDEDEMALNVWGPLSSGALQSNPAFEENKSGSGKASAGFA
AAEPGEPQPMDSNSGLGGDQGDAGNIADGIDDFLDNFLVLAGSEPGSETD
GMKIPEGDLDFAWLDNFDDLPSPSSPISEIAVSCASRENVSSLEDLSLAA
VLSVKPPERELTPAAAEAAVSAAAEAAVSAAAEAAVSAAAEAASAPIDPV
ACGALAQPYDGGLSMVAPSATSAADGEGDGTGRYITVERAIPRRDITIDE
GGGYALMNRGETRQAKIARYLAKRNRRCWTKASSYESRKKVANGRPRHKG
RFLPVVSDFIPIAELQRRQRAMMKEMQEKAARADQEACAWSESVP*
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mRNA from alignment at A-nodosum_M_contig892:91569..95171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig892.6.2 ID=mRNA_A-nodosum_M_contig892.6.2|Name=mRNA_A-nodosum_M_contig892.6.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3603bp|location=Sequence derived from alignment at A-nodosum_M_contig892:91569..95171+ (Ascophyllum nodosum dioecious)
TTTTTGTCCGCTTCAAGTTGTGACTCTGAAAAACCTCAAGTTCTGACTTC
CAAATCTGACTCGCTACAAGAACCTGATATGGACCAGGTACAGAGGGGTA
CGGTAAATTCGATCAGCCGCTGACTTTTCCTTCGAGACGTGATGGGGGGG
CGCCGTGGCCGGTGTTTCTTCCAGCTGTCGCGCCAAGAGAGCGGGTGTTT
CTTTTTGTACCATTATCCGGGTAAGGTTGCCAATCGTGTTCGTGGTCAGC
TGAACAGGGAAAATTAATATTTCCCTGTCCCCGTTCGCGCCTGAGAATTT
GGTCTCGCGAGACGGATTCGACAGTCCCGTCCCGCGTCAGCCTGCTCATC
TCCATACTCAGGCTGAATCTGGTGCTAACTTACGGGATTCCTCCCGATTT
CCGCGACGCCGTCCATATGTTTATTTAAACCACCATACACCTCCATCAGG
TCAGTCCCGAGTTTATCGGGTCACCCAATAACTTTTCCGGGTGCTCCTTA
CTCCGATTTGCCAATACGTTTAAATACCATGTAGTGGCTGTGTATTTATA
GCCTTTGTAATGTATATTACTACTACCATGTGTGATGGTGTACTACATTG
TCTCTGGTTTGTTTTTAATGTTTTTCTAGTGTCTCTGCATGGCGATCAAT
GTAAATGTACAGTATAACGATGGGCTTCTCCCCGACATTATACTGTTGAC
CCAATGTTGTCTGCATCGGGGAACCTGTTTAAATGCCATGAAGAGGTTTT
GTATTTGCAGCCTTTTTGATCCCACCTAAACGTTTTGACATTTGTTTCCC
CCATAACCGGGAGATGCTCAGAAGTTCTAGGTGCGCTCTGATTTTTGTTA
AAATACTCCAATATAATGGTTGACTTATATCCAGGTTCCATTAATGCAAG
TGTAAGGGATGAACGGTGGGTTTTCCCCCGATGGTATACTGTTGGCCCTA
CATATGCACGACCACTGGGGAACCCGATTAAATGACATAAGATTTTTTTG
AACACCTCCACTAAGGGAATTTTAAAGTGCAAAAATGGAATGGCCATTCC
GAGTCTGTAAAGTATTTGATGAATATAAAGATAAATCGTGCTATTTTGTA
ATCTCTCGCACCAAACATGTACAATAATCTCGGGAATTCTCACGCCCTCT
TTTTAGAAGTCTTTCATCAATTCCATTCCCTCTTTTGTTATTAAATTGTG
GTTGAAGGTGAAATCACAAATTCGGCGTTGAAATGAATTGTCACCCGCCT
CCGCTCCATGTGATATTTTTTTCTTCGCTCTTTTTTTACCCCACACTCCC
TCCCTCACCGTACACTTCCTCTCCACCCTCCTGTTTCTGTCCCGTTTGTT
CCTACCGCAGATTTTCTGCGAAAAACGAGTTTCTTCAACCACAGCGGTAT
CATGACCAAGTGCATCCAACGCCATACCTCATGCTCCCACCATCCTCCAT
CACATAGACGAACAGGACATAAACCAAAACGATAGTGTGTGAGGAAACAC
GAGGCCAAGAATCGGGTCAAGAAAAGAAGGAGAAACTTGAGAAACACCGG
CGCTCAAGCGGCCGCTGACGGGGGGGAGGTATCACCGACGAATCAGTTGG
AAGGGAGGAGAGGGGCCCTCGCGGCAAAGGCGTTGAAGAAACTTATTTGG
TCCAAAAGCCACTATCGGGCTATAACCATAAAATACAGCTTCGCAGCACA
AAGGGTTGGGGAAAAGAAAAAGAAAACAAAGGTCGTAATGGAGTACTTCG
GTGACCCCGCTACTTTGATGGACGAAGACGAGATGGCGCTTAACGTGTGG
GGCCCTCTCTCTTCCGGGGCTCTTCAGTCTAACCCAGCTTTCGAAGAAAA
TAAAAGCGGCAGCGGCAAGGCGAGCGCTGGGTTTGCCGCGGCAGAACCGG
GCGAGCCTCAGCCCATGGATTCCAACTCTGGGCTCGGCGGAGACCAGGGA
GACGCGGGAAACATCGCCGACGGTATCGATGACTTCCTGGACAACTTCCT
CGTCCTCGCCGGCTCCGAGCCGGGTTCCGAAACCGACGGCATGAAAATCC
CTGAGGGTGACCTAGACTTCGCCTGGCTAGATAACTTCGATGACTTGCCG
TCGCCTTCCTCCCCGATCAGCGAGATCGCGGTGTCTTGCGCTAGCAGGGA
GAATGTATCATCTTTAGAGGATCTCTCGTTGGCCGCCGTGTTGTCTGTGA
AACCGCCGGAGCGGGAGCTTACCCCTGCAGCTGCGGAGGCAGCAGTGTCG
GCGGCTGCGGAGGCAGCGGTGTCGGCGGCTGCGGAGGCAGCGGTGTCGGC
GGCTGCGGAGGCGGCCTCAGCACCCATCGATCCCGTTGCGTGTGGCGCGC
TGGCACAACCGTATGATGGTGGTTTATCTATGGTGGCTCCTTCGGCGACG
TCTGCTGCCGATGGGGAAGGCGACGGGACCGGGAGATACATCACCGTGGA
GCGGGCGATTCCGCGTCGTGACATCACGATTGACGAGGGGGGTGGGTATG
CGTTGATGAACCGCGGCGAAACGAGGCAGGCCAAGATTGCGCGCTACCTT
GCGAAGAGGAACCGGCGGTGCTGGACAAAGGCGTCGTCGTACGAAAGCCG
CAAGAAGGTGGCGAACGGCCGGCCGCGGCACAAGGGTCGCTTTCTGCCCG
TGGTGTCTGATTTCATCCCGATCGCCGAGCTGCAGCGGCGGCAGCGGGCG
ATGATGAAGGAAATGCAGGAGAAGGCGGCCAGGGCTGACCAGGAGGCTTG
CGCGTGGTCTGAATCGGTTCCATGAAATGAGGTTATTCAAGAATTTTTTT
ATACGTCGGGTACATTTTGGTGTTCTCGTTTTAAAAGTGAGAGGGAATAT
TTAGGTTACGCGGCAGCGTCTTGGGTCAAGGGAGGAGGGGGGGGAAGATA
AGGACAGTGGGGTAGGTGAAATATGCTTTCGGCCATCCCGAGACCTTGGC
GCTGTCCGTTTGCCGAAACGCAGCTGTAACTCAATGCCTTACGCTTTTAT
CTCTGTTTTGGCAAATCTTTTGTATGAAGGGACAGATGCTTTGGACTTCA
AATGGGCGGTTGAAAAGGTGGAAAAGAAAGGGGGGAAATCGGGGCTTACA
TTTTCCACTCGTTTGTACGCTGTATAGCCCCGGATCGGCCACAAACTAAA
GTACGGCAGGAAGCAATCAGTACATATATATATACACATGCATTTCGTCC
CGTTGCTGTTGCGTTGGGGTACACCCCATTACGTGGGTATGTATGATCGC
ACACATAGCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCG
TGGTCAGTTGAACAGGGTATTTGATACGTCGATAATGCCATCGTCAAACT
CGCTGCTTCGACGCGAACTTTGCCCACCGTTAGCGCGCTCACCACGCTTG
ATTTCATGGCACCTGCATTTGTGATTAGGTTACAAAGTAGGCTATGCGCC
CTTTTCATTGTAAACGAGTGGAAACGTGAGCCGGTGCGAATTTCAATGGA
GAAAAAAAGAAATTTTGTTTTGAAGCCCTAGACAATGACCTTCACGGTAC
GTCAGTATTTAGCACCTCCCACAACCACCGTGCATCGCGCTACATAATCG
AAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig892:91569..95171+

>mRNA_A-nodosum_M_contig892.6.2 ID=mRNA_A-nodosum_M_contig892.6.2|Name=mRNA_A-nodosum_M_contig892.6.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at A-nodosum_M_contig892:91569..95171+ (Ascophyllum nodosum dioecious)
ATGGAGTACTTCGGTGACCCCGCTACTTTGATGGACGAAGACGAGATGGC
GCTTAACGTGTGGGGCCCTCTCTCTTCCGGGGCTCTTCAGTCTAACCCAG
CTTTCGAAGAAAATAAAAGCGGCAGCGGCAAGGCGAGCGCTGGGTTTGCC
GCGGCAGAACCGGGCGAGCCTCAGCCCATGGATTCCAACTCTGGGCTCGG
CGGAGACCAGGGAGACGCGGGAAACATCGCCGACGGTATCGATGACTTCC
TGGACAACTTCCTCGTCCTCGCCGGCTCCGAGCCGGGTTCCGAAACCGAC
GGCATGAAAATCCCTGAGGGTGACCTAGACTTCGCCTGGCTAGATAACTT
CGATGACTTGCCGTCGCCTTCCTCCCCGATCAGCGAGATCGCGGTGTCTT
GCGCTAGCAGGGAGAATGTATCATCTTTAGAGGATCTCTCGTTGGCCGCC
GTGTTGTCTGTGAAACCGCCGGAGCGGGAGCTTACCCCTGCAGCTGCGGA
GGCAGCAGTGTCGGCGGCTGCGGAGGCAGCGGTGTCGGCGGCTGCGGAGG
CAGCGGTGTCGGCGGCTGCGGAGGCGGCCTCAGCACCCATCGATCCCGTT
GCGTGTGGCGCGCTGGCACAACCGTATGATGGTGGTTTATCTATGGTGGC
TCCTTCGGCGACGTCTGCTGCCGATGGGGAAGGCGACGGGACCGGGAGAT
ACATCACCGTGGAGCGGGCGATTCCGCGTCGTGACATCACGATTGACGAG
GGGGGTGGGTATGCGTTGATGAACCGCGGCGAAACGAGGCAGGCCAAGAT
TGCGCGCTACCTTGCGAAGAGGAACCGGCGGTGCTGGACAAAGGCGTCGT
CGTACGAAAGCCGCAAGAAGGTGGCGAACGGCCGGCCGCGGCACAAGGGT
CGCTTTCTGCCCGTGGTGTCTGATTTCATCCCGATCGCCGAGCTGCAGCG
GCGGCAGCGGGCGATGATGAAGGAAATGCAGGAGAAGGCGGCCAGGGCTG
ACCAGGAGGCTTGCGCGTGGTCTGAATCGGTTCCATGA
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