prot_A-nodosum_M_contig888.6.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig888.6.1
Unique Nameprot_A-nodosum_M_contig888.6.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length121
Homology
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 7.190e-64
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRGM 103
            MKLVRFLMKMNNETVTVELKNGTTVHGTV+SVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGN+IRCYILPDNLNLDQLLIDD PKQKPG+VKDG RGRGRGM
Sbjct:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRGRGM 103          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.340e-47
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQKPGRVKDG 95
            MKLVRFLMK+NNETVT+ELKNGTTVHGTV+ VDV+MNTHLK VKVTPKG+N    D+LSIRGN+IRCYILPDN+NLDQLLIDD PK KPG  K G
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTVAGVDVNMNTHLKGVKVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAG 95          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 151 bits (381), Expect = 4.090e-45
Identity = 73/88 (82.95%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQK 88
            MKLVRFLMK++NETVT+ELKNGT VHGTV+ VD+SMNTHLK VK+T KGKNPT+ DSLSIRGN+IRCYILPD+LNLD LLIDDTPKQK
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTVVHGTVTGVDISMNTHLKAVKMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 150 bits (380), Expect = 8.170e-45
Identity = 75/102 (73.53%), Postives = 87/102 (85.29%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRG 102
            MKLVRFLMK+NNETVT+ELKNGT V GTV+ VDV+MNT++KNVKVT KGKN   YD+LSIRGN+IR Y+LPD++NLD LLIDD PKQK  +V  GGRG GRG
Sbjct:   22 MKLVRFLMKLNNETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPGRG 123          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.240e-43
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQK--PGRVKDGGRG 98
            MKLVRFLMK+NNETVT+ELKNGT VHGTV+ VDVSMNT+L+NVK+T K KNP + ++LSIRGN+IR Y+LPDNLNLD LLIDDTPKQK  PG    GGRG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTVAGVDVSMNTYLRNVKMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 147 bits (370), Expect = 3.700e-43
Identity = 74/102 (72.55%), Postives = 88/102 (86.27%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQK--PGRVKDGGRGRG 100
            MKLVRFLMK++NETVT+ELKNGT VHGT++ VD+SMNTHLK+VK+T KGKNP + DSLSIRGN+IR YILPD+LNLD LLI+DTP++K   G    GGRGRG
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKSVKMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGRG 102          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: W7T3T7_9STRA (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 7.090e-43
Identity = 75/102 (73.53%), Postives = 86/102 (84.31%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRGRG 102
            MKLVRFLMK+NNETVT+ELKNGTT+ GT+S VDVSMNT+LKNVKVT KGKNP +Y+SLSIRGN+IR YILPD LNLD LL+DD PK K   +K G +  GRG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNK---LKPGAQAGGRG 99          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.900e-43
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQK 88
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGN+IR YILPD+LNLD LLIDD+PKQK
Sbjct:    1 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.650e-42
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQKPGRVKDG 95
            MKLVRFLMK+N ETVT+ELKNGT V GTV+ VDV+MNT++KNVK+T KGKN   YDSLSIRGN+IR YILPDNLNLD LLIDDTPK KP +V+ G
Sbjct:   23 MKLVRFLMKLNKETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTG 117          
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Match: A0A397E2M2_9STRA (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.300e-42
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQK 88
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGN+IR YILPD+LNLD LLIDD+PKQK
Sbjct:   32 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 119          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig888.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE7.190e-6495.15Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A835YYQ8_9STRA5.340e-4780.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
T0RK40_SAPDV4.090e-4582.95Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
A0A7S2FU32_9STRA8.170e-4573.53Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
A0A7S2V5U0_9STRA1.240e-4375.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]
K3WSY3_GLOUD3.700e-4372.55Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]
W7T3T7_9STRA7.090e-4373.53Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nann... [more]
A0A024TLD1_9STRA8.900e-4380.68Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]
A0A7S2SJR6_9STRA1.650e-4275.79Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]
A0A397E2M2_9STRA2.300e-4280.68Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Apha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 7.8E-16
score: 68.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..68
e-value: 3.6E-18
score: 65.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..82
e-value: 1.8E-34
score: 119.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..120
NoneNo IPR availablePANTHERPTHR23338:SF32SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..109
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..109
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 4.45539E-52
score: 157.387
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig888contigA-nodosum_M_contig888:27805..44551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig888.6.1mRNA_A-nodosum_M_contig888.6.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig888 27533..44661 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig888.6.1 ID=prot_A-nodosum_M_contig888.6.1|Name=mRNA_A-nodosum_M_contig888.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGK
NPTTYDSLSIRGNHIRCYILPDNLNLDQLLIDDTPKQKPGRVKDGGRGRG
RGMRGRGRGMRGGGRGRGRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034102Sm_D1
IPR010920LSM_dom_sf