prot_A-nodosum_M_contig864.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig864.1.1
Unique Name	prot_A-nodosum_M_contig864.1.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	92

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M+ E++GL   GTF +   +PEG  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  232 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLH 323

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M+ E++GL   GTF +   +PEG  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  437 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLH 528

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M+ E++GL   GTF +   +PEG  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  501 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLH 592

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M+ E++GL   GTF +   +PEG  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  645 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLH 736

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.280e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M+ E++GL   GTF +   +PEG  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  851 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLH 942

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5JRH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-16
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M +E+ G    GTF  +  LPEG KVIGS+WVLS+++N+ G I   KAR++A+GF Q   ++   +S+  P+ AS+KT++ +A+E G +  H
Sbjct:  284 MKKEVDGHDKNGTFTKVKELPEGRKVIGSKWVLSWKANQKGLIVDFKARMVARGFSQIPSIDVHHSSSACPSAASIKTVITVASEKGKKLAH 375

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A1R3J2F1_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3J2F1_COCAP)

HSP 1 Score: 82.0 bits (201), Expect = 3.280e-16
Identity = 40/88 (45.45%), Postives = 62/88 (70.45%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGF 88
            MNEEL+ L+   T+K++D LP G++ IG +WV   +   DG+I + KARL+AKG+ Q+EGV+YL T +P    A+++T+LV+A   G+
Sbjct:  951 MNEELEALEKTKTWKLVD-LPHGKQPIGCKWVYKVKRKADGSIERYKARLVAKGYTQQEGVDYLDTFSPVAKIATIRTLLVVAALKGW 1037

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.400e-16
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M  E++GL   GTF +   +PEG  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  165 MCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLH 256

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A1R3IUY4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3IUY4_COCAP)

HSP 1 Score: 81.6 bits (200), Expect = 4.450e-16
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGF 88
            MNEEL+ L+   T+K++D LP G++ IG +WV   +  +DG+I + KARL+AKG+ Q+EG++YL T +P    A+V+T+L I    G+
Sbjct:  839 MNEELEALEKTRTWKLVD-LPPGKQAIGCKWVFKVKRKEDGSIERYKARLVAKGYTQQEGIDYLDTFSPVAKMATVRTLLAITAMKGW 925

[Close]

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.970e-15
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 0

Query:    1 MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 92
            M+ E++GL   GTF +   +P G  VI +RWV  +++++ G I K KARL+AKGF Q+ GV+YL+T +PT   AS++ ++ +A +   +  H
Sbjct:  799 MSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLH 890

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JV80_9PHAE	1.250e-16	41.30	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5LDZ0_9PHAE	1.270e-16	41.30	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J594_9PHAE	1.270e-16	41.30	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KHE8_9PHAE	1.270e-16	41.30	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K622_9PHAE	1.280e-16	41.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRH7_9PHAE	2.580e-16	42.39	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A1R3J2F1_COCAP	3.280e-16	45.45	Integrase, catalytic core n=1 Tax=Corchorus capsul...	[more]
A0A6H5JP36_9PHAE	4.400e-16	41.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A1R3IUY4_COCAP	4.450e-16	44.32	Integrase, catalytic core n=1 Tax=Corchorus capsul...	[more]
A0A6H5JB16_9PHAE	3.970e-15	40.22	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 14..89 e-value: 1.5E-11 score: 44.4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig864	contig	A-nodosum_M_contig864:604..879 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig864.1.1	mRNA_A-nodosum_M_contig864.1.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig864 604..894 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig864.1.1 ID=prot_A-nodosum_M_contig864.1.1|Name=mRNA_A-nodosum_M_contig864.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARL
MAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2