mRNA_A-nodosum_M_contig864.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig864.1.1
Unique NamemRNA_A-nodosum_M_contig864.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6H5JRH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.770e-17
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            W  AM +E+ G    GTF  +  LPEG KVIGS+WVLS+++N+ G I   KAR++A+GF Q   ++   +S+  P+ AS+KT++ +A+E G +  H
Sbjct:  280 WEAAMKKEVDGHDKNGTFTKVKELPEGRKVIGSKWVLSWKANQKGLIVDFKARMVARGFSQIPSIDVHHSSSACPSAASIKTVITVASEKGKKLAH 375
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 3.260e-16
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct:   82 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 176
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 77.0 bits (188), Expect = 8.410e-16
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTY 288
            W  AM EEL+ LK   T+ ++   PEG KV+  +WV   + NKDG + + KARL+A+G+ Q EG++Y +T +P     S++T+L  + E  +Q +
Sbjct:   46 WKLAMEEELENLKRNETWDIVPR-PEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVH 139
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8C149_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C149_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 9.870e-16
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct:  221 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 315
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A6D2HVI4_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HVI4_9BRAS)

HSP 1 Score: 80.9 bits (198), Expect = 9.960e-16
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGF 279
            WL AMNEEL  L+  GT+++   LP+ +  IG RWV   + N DG++ + KA L+AKG+ QREG++++ T +P     +VKT+L +A   G+
Sbjct:  363 WLAAMNEELIALEKTGTWEICS-LPDDKHAIGCRWVYKTKLNADGSLERYKACLVAKGYTQREGIDFVDTFSPVAKMTTVKTLLAVAAAKGW 453
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8C4W4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4W4_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 9.990e-16
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct:  723 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 817
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8CAT7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8CAT7_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct:  465 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 559
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8C4Z1_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4Z1_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct:  557 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 651
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8BG36_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BG36_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct:  747 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 841
[Close]
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Match: A0A5E8BEA2_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BEA2_9ASCO)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    4 WLWAMNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARLMAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH 291
            WL A   E+  LK  GT++++D LP G K I S+WV   +   DG+I + KARL+  GF Q EG++Y +T AP     +V+ +L IA + GFQ +H
Sbjct: 1099 WLEACVIEMSSLKRNGTWELVD-LPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHH 1193
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRH7_9PHAE1.770e-1742.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1W8_9ASCO3.260e-1642.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0015A81C6A8.410e-1638.95uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A5E8C149_9ASCO9.870e-1642.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HVI4_9BRAS9.960e-1642.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C4W4_9ASCO9.990e-1642.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8CAT7_9ASCO1.000e-1542.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4Z1_9ASCO1.010e-1542.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8BG36_9ASCO1.010e-1542.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8BEA2_9ASCO1.010e-1542.71Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig864contigA-nodosum_M_contig864:604..894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65672.G4TQF2
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size291
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size276
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870251.9873588-CDS-A-nodosum_M_contig864:603..8791680870251.9873588-CDS-A-nodosum_M_contig864:603..879Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig864 604..879 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870251.999426-UTR-A-nodosum_M_contig864:879..8941680870251.999426-UTR-A-nodosum_M_contig864:879..894Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig864 880..894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig864.1.1prot_A-nodosum_M_contig864.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig864 604..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig864.1.1

>prot_A-nodosum_M_contig864.1.1 ID=prot_A-nodosum_M_contig864.1.1|Name=mRNA_A-nodosum_M_contig864.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MNEELKGLKDLGTFKVLDGLPEGEKVIGSRWVLSYESNKDGNITKTKARL
MAKGFMQREGVNYLQTSAPTPAGASVKTMLVIANEMGFQTYH
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mRNA from alignment at A-nodosum_M_contig864:604..894-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig864.1.1 ID=mRNA_A-nodosum_M_contig864.1.1|Name=mRNA_A-nodosum_M_contig864.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at A-nodosum_M_contig864:604..894- (Ascophyllum nodosum dioecious)
GCGTGGCTTTGGGCCATGAATGAAGAATTAAAGGGTTTAAAAGATTTGGG
TACTTTCAAGGTATTGGATGGACTGCCCGAGGGTGAGAAGGTCATTGGGT
CTCGATGGGTGCTTTCATATGAGTCAAACAAGGATGGAAACATCACAAAG
ACGAAAGCTAGACTTATGGCAAAGGGGTTCATGCAAAGAGAAGGCGTGAA
CTACCTCCAAACATCAGCACCAACACCGGCAGGGGCATCGGTTAAGACGA
TGTTGGTCATTGCAAATGAGATGGGATTCCAAACATACCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig864:604..894-

>mRNA_A-nodosum_M_contig864.1.1 ID=mRNA_A-nodosum_M_contig864.1.1|Name=mRNA_A-nodosum_M_contig864.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig864:604..894- (Ascophyllum nodosum dioecious)
ATGAATGAAGAATTAAAGGGTTTAAAAGATTTGGGTACTTTCAAGGTATT
GGATGGACTGCCCGAGGGTGAGAAGGTCATTGGGTCTCGATGGGTGCTTT
CATATGAGTCAAACAAGGATGGAAACATCACAAAGACGAAAGCTAGACTT
ATGGCAAAGGGGTTCATGCAAAGAGAAGGCGTGAACTACCTCCAAACATC
AGCACCAACACCGGCAGGGGCATCGGTTAAGACGATGTTGGTCATTGCAA
ATGAGATGGGATTCCAAACATACCAT
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