prot_A-nodosum_M_contig849.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig849.3.1
Unique Nameprot_A-nodosum_M_contig849.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length134
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9GBV9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GBV9_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct:   92 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 218
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9FWM1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FWM1_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 2.940e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct:  200 DLPHGKSAIGCRWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 326
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9ERK1_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ERK1_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.000e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct:  690 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 816
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9HZ59_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HZ59_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.000e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct:  660 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 786
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9IEV9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IEV9_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.000e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct:  664 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 790
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9GUY8_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GUY8_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.020e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct:  761 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 887
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9EPL4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EPL4_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.050e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct: 1050 DLPHGKSAIGCRWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 1176
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9EY08_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EY08_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.060e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct: 1058 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 1184
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9F7S6_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F7S6_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.070e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct: 1171 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 1297
[Close]
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2N9ELG9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ELG9_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 3.100e-20
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    3 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFT 119
            DLPH  + IG           DG IE+YK R V +G+ Q  G++Y E+ +P    +S+R++LA AAV  W L  +D + A L  D+ E +Y++    Y  +P+ V LLR  +YGL Q+   WF KF+
Sbjct: 1543 DLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDYPDKVCLLRRALYGLKQAPRAWFAKFS 1669
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GBV9_FAGSY2.670e-2038.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9FWM1_FAGSY2.940e-2038.58Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9ERK1_FAGSY3.000e-2038.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HZ59_FAGSY3.000e-2038.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IEV9_FAGSY3.000e-2038.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GUY8_FAGSY3.020e-2038.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EPL4_FAGSY3.050e-2038.58Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9EY08_FAGSY3.060e-2038.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F7S6_FAGSY3.070e-2038.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9ELG9_FAGSY3.100e-2038.58Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 18..132
e-value: 1.3E-20
score: 74.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig849contigA-nodosum_M_contig849:74874..75275 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig849.3.1mRNA_A-nodosum_M_contig849.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig849 73881..75275 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig849.3.1 ID=prot_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MEDLPHAVAYIGMDGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSM
RAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLL
RNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2