mRNA_A-nodosum_M_contig849.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig849.3.1
Unique NamemRNA_A-nodosum_M_contig849.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 6.690e-43
Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query:   40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
            +G+I+ +K R V +GF Q+  ++Y  SSSP P+++S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P
Sbjct:  795 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1059          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 7.220e-43
Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query:   40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
            +G+I+ +K R V +GF Q+  ++Y  SSSP P+++S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P
Sbjct: 1174 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1438          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 7.300e-43
Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query:   40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
            +G+I+ +K R V +GF Q+  ++Y  SSSP P+++S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P
Sbjct: 1194 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1458          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 7.380e-43
Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query:   40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
            +G+I+ +K R V +GF Q+  ++Y  SSSP P+++S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P RE +G+++W +T +RP++ FA   +A+    P
Sbjct: 1337 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1601          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.140e-42
Identity = 108/309 (34.95%), Postives = 165/309 (53.40%), Query Frame = 1
Query:   40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPGFDDVSIRRLRPCNMPG*PTFGLRWSRYGGRWPD 966
            +G+I+K+K R V +GF Q+  ++Y  SSSP P+++S+  +LA A  KG  L H D +QA   A +DE ++  L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ L+  F  K+LGE +++ GC I R+ +A TL   Q  Y +++ ++F+V +T  IP T G      + GP   +E EE    P R+ +G+++W +T +RP++ FAA  +A+    P     D   + L    + G    G+ + R  G  P 
Sbjct:  904 EGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILG--YLKGTRDLGITYQRGSGLGPS 1202          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 167 bits (424), Expect = 7.990e-42
Identity = 106/301 (35.22%), Postives = 159/301 (52.82%), Query Frame = 1
Query:    7 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQA--DIDEAIYIELLQDY--RAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNT--GMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPG 861
            D P AV  +G            G I+KYK R V QGF Q+ G++Y E+ +P    SS+R +LA AA  GW++   D   A L +  D DE IY+E   D+  +   N V  LR  +YGL Q G  W+      + +    ++ +   VF  I D   +TV+ ++VDD  +              +   + + DLGE  + LG  + R+R+ARTL+  QH Y +++  +FN T+     IPM   ++ L+K   PT+  +   MR+IPYRE +G+L++AA  TRP++ FA  TLA+F  NPG
Sbjct:  999 DRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAI-DANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPG 1297          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 167 bits (423), Expect = 1.050e-41
Identity = 107/286 (37.41%), Postives = 158/286 (55.24%), Query Frame = 1
Query:   43 GQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGL---LRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKP---LSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPG-PGFDDV 879
            G+I+KYK R V +GF QV G++Y+++ +P    SS+R +LA AA  GW     D   A L + +DE +Y+E   D+ AF +       L   +YGL Q G  W+      +      +  A   VF +  +GE + V+ V+VDD LL    +     T S + + +KI DLG   + LG  I+ + +A TL+  QH Y E +  +FN T+  + P++  + P   LSK   P +P E   MRR+PYRE +GAL++AA  TRP++ FA  TLA+F  NPG P +D V
Sbjct:  856 GEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDH-AFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKH-EGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTD--LKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAV 1137          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.340e-41
Identity = 98/273 (35.90%), Postives = 154/273 (56.41%), Query Frame = 1
Query:   40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
            +G+I+ +K R V +GF Q+  ++Y  SSSP P+++S++ +LA A  KG  L H D +QA   A +DE ++++L        + +      IYGL QSG  W     D + E   EQ  A  CVF ++VD  VV +IV+YVDDIL+A    ED    L+ LS  F  K+L E +++ GC I R+ +  TL   Q  Y +++ K+F+V +T  IP + GV     + GP   ++ E+    P RE +G+++W +T +RP++ FA   +A+    P
Sbjct:  349 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGV-----DLGPK--RDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAP 613          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 166 bits (419), Expect = 1.340e-41
Identity = 90/266 (33.83%), Postives = 155/266 (58.27%), Query Frame = 1
Query:   55 KYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMI--PMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKF 846
            +YK R V +G  QV GL++ E+ SP    SS+R +++ AAVK W++ H+D + A L  D++E IY+    ++      V  L+  +YGL Q+G CW  K T+ + +    +S +  C+F R  +  +V ++ ++VDD+++ S    ++ +  S L+  F++KDLG     LG ++TR+R  R L+ DQ  Y E V K+F++ N   +  PM + VK L+ E     P        +PY+E +G L++ + +TRP+++FA +TL++F
Sbjct:  285 RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIV-IVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSMENCKPVSTPMESDVKGLAMEQKDVQPYNEA----VPYQEAIGCLLYISQITRPDIIFAVNTLSRF 545          
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A540NMN0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMN0_MALBA)

HSP 1 Score: 164 bits (415), Expect = 1.850e-41
Identity = 104/277 (37.55%), Postives = 150/277 (54.15%), Query Frame = 1
Query:   43 GQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDY--RAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNT--GMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPG 861
            G+IE++K R V +GF Q +G++Y+++ SP  +  SMR V+A  A    EL  +D + A L  D++E IY++    +  R   N V  L   IYGL Q+   W+ KF   +  +  E++    C++ +   G     +V+YVDDILLAS   +   RT   LS  F +KDLGEA + LG  I RNR+ R L   Q  Y + V  +FN+ N   G +P+  G K  SK   P    E E+M+  PY   VG+L++A   TRP+L F    L +F  NPG
Sbjct:  158 GKIERHKARLVAKGFTQREGIDYNDTFSPVSSKDSMRVVMALVAHFDLELHQMDVKTAFLNGDLEECIYMKQPTGFVERGKENMVCQLNKSIYGLKQASRQWYLKFDQIVSSQGFEENKLDDCIYLKF-SGSQFIFLVLYVDDILLASSCPQLLQRTKRMLSESFDMKDLGEAHYVLGIEIVRNRQKRLLGLSQKGYIDRVLHRFNMENCSCGQVPVNKGDK-FSKSQCPRTDLETEKMQGKPYASLVGSLMYATICTRPDLAFITGMLGRFQSNPG 432          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE6.690e-4336.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE7.220e-4336.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.300e-4336.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.380e-4336.63Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQW4_9PHAE4.140e-4234.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6PCF8_9APHY7.990e-4235.22Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A060SPD4_PYCCI1.050e-4137.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC10_9PHAE1.340e-4135.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GI29_9HEMI1.340e-4133.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540NMN0_MALBA1.850e-4137.55Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig849contigA-nodosum_M_contig849:73881..75275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog71139.XP_010066627.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,rve
Model size1198
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.08e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3GBWZ@35493|Streptophyta
Descriptioncysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size402
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.4201195-UTR-A-nodosum_M_contig849:73880..740221680870224.4201195-UTR-A-nodosum_M_contig849:73880..74022Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig849 73881..74022 -
1680870224.4339433-UTR-A-nodosum_M_contig849:74130..743221680870224.4339433-UTR-A-nodosum_M_contig849:74130..74322Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig849 74131..74322 -
1680870224.4448519-UTR-A-nodosum_M_contig849:74411..748731680870224.4448519-UTR-A-nodosum_M_contig849:74411..74873Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig849 74412..74873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.455942-CDS-A-nodosum_M_contig849:74873..752751680870224.455942-CDS-A-nodosum_M_contig849:74873..75275Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig849 74874..75275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig849.3.1prot_A-nodosum_M_contig849.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig849 74874..75275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig849.3.1

>prot_A-nodosum_M_contig849.3.1 ID=prot_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MEDLPHAVAYIGMDGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSM
RAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLL
RNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*
back to top

mRNA from alignment at A-nodosum_M_contig849:73881..75275-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig849.3.1 ID=mRNA_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73881..75275- (Ascophyllum nodosum dioecious)
ATGGAGGACCTTCCGCATGCAGTGGCATATATCGGAATGGATGGCCAAAT AGAGAAATACAAGTGTCGCTTCGTGACCCAGGGGTTTCGCCAGGTGAAAG GGTTGAACTATCATGAGTCGTCCTCTCCCACTCCTACAGCCTCCAGCATG AGGGCAGTACTTGCCACCGCGGCCGTGAAGGGTTGGGAACTCCCGCACAT CGATGGCGAGCAAGCATGTCTTCAGGCTGACATCGATGAAGCGATCTACA TCGAACTACTCCAAGACTACCGCGCGTTTCCGAACGCGGTCGGCTTGCTG AGGAATGTCATCTATGGGTTGGTGCAATCAGGATTATGCTGGTTCCGAAA ATTCACAGACGGTATCAAAGAAAAGAGCGTCGAACAGTCCCACGCGGTTT GATGCGTGTTCAGTAGAATCGTCGACGGCGAAGTCGTGACCGTTATTGTG GTATACGTCGACGACATACTGCTGGCGAGCAAAATAAAGGAGGATGAGGG AAGGACGTTGTCGGATCTCAGTTCATGCTTCAAGATTAAGGACCTCGGGG AAGCGGAATTCTACCTAGGATGTCATATCACGCGGAACAGGAAAGCAAGG ACATTGACCTTCGACCAACATATCTATCCCGAGACCGTGGAAAAGAAATT CAATGTGACCAATACTGGCATGATCCCGATGACAACAGGGGTGAAGCCTC TATCCAAGGAGGGCGGTCCTACAAACCCCAAAGAAAGGGAAGAAATGCGT CGCATCCCATACAGGGAGGAAGTGGGGGCTCTGATTTGGGCGGCGACCAT GACTAGACCGAATCTTTTGTTTGCGGCGCATACCCTGGCCAAGTTCTGCG ACAACCCCGGACCAGTACACTGGAAGGCGGCAACAATAGCGCTACGGTAC TTCTGGCTGACGAAGGACCTCGGCATCACCTATGATGGCGGAGTTACATC AAGGGGTTTGACGACGTCAGCATACGTCGACTCCGACCATGCAACATGCC CGGATAGCCGACGTTCGGTCTCAGATGGAGCAGATATGGTGGGAGGTGGC CCGATAAGTTGGCTCTCACGCGCACAGAGGGTAACAGCGTCGGCGTCATA CGGGTTGGAGTATGTGGCGCTTGCAGAAATCGTGAATGTAACTAAGTTCC TTCGTCAGATGCAAGAGTTCATCATGCCTACTCTGAGGAGCTGCACGATT TCAATCATGTAGGATAATCAAGGTGAAATCAAGGTGGCGAACAACAAACA CAGCAGCAGAAGAACGCGCCACATCGACGTCAAGCACAACATTGTTCGAG ACGCCGTCGAGGAGGGATTGGTCCGCATTGTTTATGTTAGGAGTGAAGAG CAGCATACAGACATACTCACGAAGGCTTTAGATATGAGGACTTTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig849:73881..75275-

>mRNA_A-nodosum_M_contig849.3.1 ID=mRNA_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73881..75275- (Ascophyllum nodosum dioecious)
ATGGAGGACCTTCCGCATGCAGTGGCATATATCGGAATGGATGGCCAAAT
AGAGAAATACAAGTGTCGCTTCGTGACCCAGGGGTTTCGCCAGGTGAAAG
GGTTGAACTATCATGAGTCGTCCTCTCCCACTCCTACAGCCTCCAGCATG
AGGGCAGTACTTGCCACCGCGGCCGTGAAGGGTTGGGAACTCCCGCACAT
CGATGGCGAGCAAGCATGTCTTCAGGCTGACATCGATGAAGCGATCTACA
TCGAACTACTCCAAGACTACCGCGCGTTTCCGAACGCGGTCGGCTTGCTG
AGGAATGTCATCTATGGGTTGGTGCAATCAGGATTATGCTGGTTCCGAAA
ATTCACAGACGGTATCAAAGAAAAGAGCGTCGAACAGTCCCACGCGGTTT
GA
back to top