mRNA_A-nodosum_M_contig849.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 171 bits (432), Expect = 6.690e-43 Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query: 40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
+G+I+ +K R V +GF Q+ ++Y SSSP P+++S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P
Sbjct: 795 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1059
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 171 bits (432), Expect = 7.220e-43 Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query: 40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
+G+I+ +K R V +GF Q+ ++Y SSSP P+++S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P
Sbjct: 1174 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1438
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 171 bits (432), Expect = 7.300e-43 Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query: 40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
+G+I+ +K R V +GF Q+ ++Y SSSP P+++S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P
Sbjct: 1194 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1458
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 171 bits (432), Expect = 7.380e-43 Identity = 100/273 (36.63%), Postives = 155/273 (56.78%), Query Frame = 1
Query: 40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
+G+I+ +K R V +GF Q+ ++Y SSSP P+++S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P RE +G+++W +T +RP++ FA +A+ P
Sbjct: 1337 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1601
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 168 bits (426), Expect = 4.140e-42 Identity = 108/309 (34.95%), Postives = 165/309 (53.40%), Query Frame = 1
Query: 40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPGPGFDDVSIRRLRPCNMPG*PTFGLRWSRYGGRWPD 966
+G+I+K+K R V +GF Q+ ++Y SSSP P+++S+ +LA A KG L H D +QA A +DE ++ L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ L+ F K+LGE +++ GC I R+ +A TL Q Y +++ ++F+V +T IP T G + GP +E EE P R+ +G+++W +T +RP++ FAA +A+ P D + L + G G+ + R G P
Sbjct: 904 EGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-----DLGPK--REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILG--YLKGTRDLGITYQRGSGLGPS 1202
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY) HSP 1 Score: 167 bits (424), Expect = 7.990e-42 Identity = 106/301 (35.22%), Postives = 159/301 (52.82%), Query Frame = 1
Query: 7 DLPHAVAYIGM----------DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQA--DIDEAIYIELLQDY--RAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNT--GMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPG 861
D P AV +G G I+KYK R V QGF Q+ G++Y E+ +P SS+R +LA AA GW++ D A L + D DE IY+E D+ + N V LR +YGL Q G W+ + + ++ + VF I D +TV+ ++VDD + + + + DLGE + LG + R+R+ARTL+ QH Y +++ +FN T+ IPM ++ L+K PT+ + MR+IPYRE +G+L++AA TRP++ FA TLA+F NPG
Sbjct: 999 DRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAI-DANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQ-LTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPG 1297
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI) HSP 1 Score: 167 bits (423), Expect = 1.050e-41 Identity = 107/286 (37.41%), Postives = 158/286 (55.24%), Query Frame = 1
Query: 43 GQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGL---LRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKP---LSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPG-PGFDDV 879
G+I+KYK R V +GF QV G++Y+++ +P SS+R +LA AA GW D A L + +DE +Y+E D+ AF + L +YGL Q G W+ + + A VF + +GE + V+ V+VDD LL + T S + + +KI DLG + LG I+ + +A TL+ QH Y E + +FN T+ + P++ + P LSK P +P E MRR+PYRE +GAL++AA TRP++ FA TLA+F NPG P +D V
Sbjct: 856 GEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDH-AFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKH-EGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTD--LKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAV 1137
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.340e-41 Identity = 98/273 (35.90%), Postives = 154/273 (56.41%), Query Frame = 1
Query: 40 DGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNP 858
+G+I+ +K R V +GF Q+ ++Y SSSP P+++S++ +LA A KG L H D +QA A +DE ++++L + + IYGL QSG W D + E EQ A CVF ++VD VV +IV+YVDDIL+A ED L+ LS F K+L E +++ GC I R+ + TL Q Y +++ K+F+V +T IP + GV + GP ++ E+ P RE +G+++W +T +RP++ FA +A+ P
Sbjct: 349 EGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGS-DEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGV-----DLGPK--RDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAP 613
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 166 bits (419), Expect = 1.340e-41 Identity = 90/266 (33.83%), Postives = 155/266 (58.27%), Query Frame = 1
Query: 55 KYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDYRAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNTGMI--PMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKF 846
+YK R V +G QV GL++ E+ SP SS+R +++ AAVK W++ H+D + A L D++E IY+ ++ V L+ +YGL Q+G CW K T+ + + +S + C+F R + +V ++ ++VDD+++ S ++ + S L+ F++KDLG LG ++TR+R R L+ DQ Y E V K+F++ N + PM + VK L+ E P +PY+E +G L++ + +TRP+++FA +TL++F
Sbjct: 285 RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIV-IVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSMENCKPVSTPMESDVKGLAMEQKDVQPYNEA----VPYQEAIGCLLYISQITRPDIIFAVNTLSRF 545
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Match: A0A540NMN0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMN0_MALBA) HSP 1 Score: 164 bits (415), Expect = 1.850e-41 Identity = 104/277 (37.55%), Postives = 150/277 (54.15%), Query Frame = 1
Query: 43 GQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMRAVLATAAVKGWELPHIDGEQACLQADIDEAIYIELLQDY--RAFPNAVGLLRNVIYGLVQSGLCWFRKFTDGIKEKSVEQSHAV*CVFSRIVDGEVVTVIVVYVDDILLASKIKEDEGRTLSDLSSCFKIKDLGEAEFYLGCHITRNRKARTLTFDQHIYPETVEKKFNVTNT--GMIPMTTGVKPLSKEGGPTNPKEREEMRRIPYREEVGALIWAATMTRPNLLFAAHTLAKFCDNPG 861
G+IE++K R V +GF Q +G++Y+++ SP + SMR V+A A EL +D + A L D++E IY++ + R N V L IYGL Q+ W+ KF + + E++ C++ + G +V+YVDDILLAS + RT LS F +KDLGEA + LG I RNR+ R L Q Y + V +FN+ N G +P+ G K SK P E E+M+ PY VG+L++A TRP+L F L +F NPG
Sbjct: 158 GKIERHKARLVAKGFTQREGIDYNDTFSPVSSKDSMRVVMALVAHFDLELHQMDVKTAFLNGDLEECIYMKQPTGFVERGKENMVCQLNKSIYGLKQASRQWYLKFDQIVSSQGFEENKLDDCIYLKF-SGSQFIFLVLYVDDILLASSCPQLLQRTKRMLSESFDMKDLGEAHYVLGIEIVRNRQKRLLGLSQKGYIDRVLHRFNMENCSCGQVPVNKGDK-FSKSQCPRTDLETEKMQGKPYASLVGSLMYATICTRPDLAFITGMLGRFQSNPG 432 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig849.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig849.3.1 >prot_A-nodosum_M_contig849.3.1 ID=prot_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp MEDLPHAVAYIGMDGQIEKYKCRFVTQGFRQVKGLNYHESSSPTPTASSMback to top mRNA from alignment at A-nodosum_M_contig849:73881..75275- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig849.3.1 ID=mRNA_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73881..75275- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig849:73881..75275- >mRNA_A-nodosum_M_contig849.3.1 ID=mRNA_A-nodosum_M_contig849.3.1|Name=mRNA_A-nodosum_M_contig849.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig849:73881..75275- (Ascophyllum nodosum dioecious)back to top |