prot_A-nodosum_M_contig8484.1.4 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8484.1.4
Unique Nameprot_A-nodosum_M_contig8484.1.4
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length93
Homology
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 5.080e-32
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 0
Query:    2 KRAKVGGKLWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFESGADLERAM 91
            KRAKV     R       +ECIREPGWS+KVSLSR+ADHFIFGIESV MLPP   KELLKDSIQVLRQKCDS++AEVEAFESG D + AM
Sbjct:  278 KRAKVA----RPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPP---KELLKDSIQVLRQKCDSMIAEVEAFESGVDFDEAM 360          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.370e-32
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 0
Query:    2 KRAKVGGKLWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFESGADLERAM 91
            KRAKV     R       +ECIREPGWS+KVSLSR+ADHFIFGIESV MLPP   KELLKDSIQVLRQKCDS++AEVEAFESG D + AM
Sbjct:  280 KRAKVA----RPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPP---KELLKDSIQVLRQKCDSMIAEVEAFESGIDFDEAM 362          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A6G0XIR3_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIR3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.390e-12
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 0
Query:   20 QECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFE 82
            +ECIR PGWS+KV L R++DHFIF +E+V MLPP   ++LL ++++VL  KCD  +  + A +
Sbjct:  261 RECIRAPGWSDKVELGRVSDHFIFSVETVGMLPP---EDLLPEALKVLMTKCDVAVESLNAMD 320          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.800e-12
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 0
Query:   20 QECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFE 82
            +ECIR PGWS+KV + R++DHFIF +E+V MLPP   ++LL ++I+VL  KCD  +  + A +
Sbjct:  261 RECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPP---EDLLPEAIKVLVAKCDVAVESLNAVD 320          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A2U1M4I5_ARTAN (DNA-directed RNA polymerase, dimerization n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1M4I5_ARTAN)

HSP 1 Score: 70.1 bits (170), Expect = 4.330e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0
Query:    6 VGGK----LWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEV 78
            +GGK    + R       +ECIREPGW EKV+L R+ DHFIF IES   LPP   + L  +++++L  KC+S++ E+
Sbjct:  296 IGGKQRATVARPRACTLCRECIREPGWEEKVALRRVKDHFIFTIESTGALPP---EVLFTEAVKILEDKCESVITEL 369          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A1V9ZSM6_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSM6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.240e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   20 QECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFE 82
            +ECIR PGW EKV L R++DHFIF +E+V ML P   +ELL ++++VL  KCD  L  + + +
Sbjct:  261 RECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKP---EELLPEALKVLMSKCDVALESLNSID 320          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.080e-11
Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   20 QECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFESG 84
            +ECIR+ GW E+V L R ADH+IF +E+V ML PR   +++K++I++LR+KC   L E++   +G
Sbjct:  277 RECIRQEGWDERVKLYRAADHYIFKVEAVGMLAPR---DIVKEAIRILREKCTDFLGELQGDPAG 338          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A2J6LN13_LACSA (RPOLD domain-containing protein n=4 Tax=Asteraceae TaxID=4210 RepID=A0A2J6LN13_LACSA)

HSP 1 Score: 68.9 bits (167), Expect = 1.190e-11
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 0
Query:    2 KRAKVGGKLWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEV 78
            KRA V     R       +ECIREPGW EKV+L R+ DHFIF IES   LPP   + L  +++Q+L  KC+ ++ E+
Sbjct:  327 KRATVA----RPRACTLCRECIREPGWEEKVALRRVKDHFIFTIESTGALPP---EVLFTEAVQILEDKCERVITEM 396          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.440e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   20 QECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFESGAD 86
            +ECIREPGW EK+ L R++DHFIF +ESV M+ P   +ELL +++ VL  KC+  L   E+F    D
Sbjct:  270 RECIREPGWDEKIKLGRVSDHFIFSVESVGMIKP---EELLPEALNVLVDKCNLAL---ESFNQADD 330          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: W4GC85_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GC85_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.620e-11
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0
Query:   20 QECIREPGWSEKVSLSRIADHFIFGIESVRMLPPRWRKELLKDSIQVLRQKCDSLLAEVEAFE 82
            +ECIR PGWS+KV L R++DHFIF +E+V ML P   ++LL ++I+VL  KCD  +  + A +
Sbjct:  261 RECIRAPGWSDKVKLGRVSDHFIFSVETVGMLRP---EDLLPEAIKVLVAKCDVAVESLNAVD 320          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI5.080e-3272.22DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE7.370e-3272.22DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6G0XIR3_9STRA1.390e-1249.21DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA3.800e-1249.21DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A2U1M4I5_ARTAN4.330e-1244.16DNA-directed RNA polymerase, dimerization n=2 Tax=... [more]
A0A1V9ZSM6_9STRA7.240e-1249.21DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2RJI0_9STRA1.080e-1146.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2J6LN13_LACSA1.190e-1145.45RPOLD domain-containing protein n=4 Tax=Asteraceae... [more]
A0A5D6XHD4_9STRA1.440e-1149.25DNA-directed RNA polymerases I and III subunit RPA... [more]
W4GC85_9STRA3.620e-1149.21DNA-directed RNA polymerases I and III subunit RPA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 57..77
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 9..79
e-value: 2.9E-13
score: 51.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 18..80
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 26..71
e-value: 2.0E-5
score: 24.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8484contigA-nodosum_M_contig8484:7411..8283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8484.1.4mRNA_A-nodosum_M_contig8484.1.4Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8484 3985..8908 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8484.1.4 ID=prot_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MKRAKVGGKLWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRM
LPPRWRKELLKDSIQVLRQKCDSLLAEVEAFESGADLERAMS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3