mRNA_A-nodosum_M_contig8484.1.4 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI) HSP 1 Score: 301 bits (772), Expect = 2.870e-94 Identity = 182/300 (60.67%), Postives = 208/300 (69.33%), Query Frame = 3
Query: 30 KNDAPSEVFEAASDKERLDRTL-GFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSS-SWRLSTP--PASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPG 896
KNDAPSEVFEAAS++ER DR L +A+R + +D+KAV++ G NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMF E++ H R P +P V GG D+ + + + P PA + A PRRTMNVFSGAMEWCPHG QVERFE +GGLRPVHDDILIAKLRP QEIVAE+HCRKGIGKDHAKFSPVATASYRLLPVV+LKEE+E +AEELVAKCPLNVFDIEDLG + +R++ DCTMCR PG
Sbjct: 11 KNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAH--RLGLIPIMANP----RMFEFVGEEGGEQDEPTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAG-PRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGG--AGKRAK--VARPRDCTMCRECIREPG 299
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE) HSP 1 Score: 279 bits (713), Expect = 1.910e-85 Identity = 173/314 (55.10%), Postives = 205/314 (65.29%), Query Frame = 3
Query: 30 KNDAPSEVFEAASDKERLDRTL-GFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDP-------DHG*SAN--------VRVRRRGGR--GDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPG 896
KNDAPSEVFEAAS++ER DR L +A+R + +D+KAV + G +NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMF E++ H R P +P D G + VRV+ G + G + + + L A+ +++ GAMEWCPHG QVERFE +GGLRPVHDDILIAKLRP QEIVAE+HCRKGIGKDHAKFSPVATASYRLLPVV+LK+E+E +AEELVAKCPLNVFDIEDLG + +R++ DCTMCR PG
Sbjct: 11 KNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAH--RLGLIPIMANPRMFEFVGDEGGEQDEATDGVQHVRVQAGGEKPGGPGGHAGPYADGYELCGGAATDHERLQV-----------------GAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIEDLGG--AGKRAK--VARPRDCTMCRECIREPG 301
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.650e-53 Identity = 132/314 (42.04%), Postives = 169/314 (53.82%), Query Frame = 3
Query: 30 KNDAPSEVFEAASDKERLDRTLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYM-------FAELVDHPRRDPCAPTRIDPDHG*SANVRVRRRG------GRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRR--------TMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPGGAKR 908
+ DAP VF AA + +R L + ++ RR++ + + ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM F E++ H R P +DP + V R+ R + + + T + + R R C RP T V+SG EW P G Q ERF GLRP+HDDIL+AKLR QEI E+HCRKG+GKDHAK+SPVATASYRL P ++L + + A ELVA CP+NVFDIED G + DCTMCR PG A+R
Sbjct: 9 RGDAPHRVFSAAKP-DPAERGLRYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSH--RLGLVPLNVDPRT--FSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED-GEXXXXXGAVAVVARPRDCTMCRECIRPPGWAER 311
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.040e-51 Identity = 130/316 (41.14%), Postives = 169/316 (53.48%), Query Frame = 3
Query: 9 SCNQVQDKNDAPSEVFEAASDKERLDRTLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYM-------FAELVDHPRRDPCAPTRIDP---------DHG*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPGGAKR 908
S + Q KN SE F+ S F+DR ++ +E ++ E ELVFDL+GVDAS+ANALRRI+LAEV T+AIE+VY+ E++ H R P ++DP D S N V V S T P T TM+V+S ++W P Q E F G+RPVH+DIL+AKLRP Q I E HC++G+GKDHAKFSPVATASYRLLP + + +E++ + AE+L A CP+NVFDIEDLG ERR+ + DCTMCR G +R
Sbjct: 8 SIRRYQVKNQGVSEEFQPVSAAADASVHRPFSDRL---LEGMRIEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAH--RLGLVPIQVDPRLFKDKVPQDEINSKNTVV----------FGLDVQCSRSADTRPPGSTEPY-------------TMSVYSKHLQWLPQADQAEEFPD--GIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGG---ERRA--TAARPRDCTMCRECIRQEGWDER 288
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL) HSP 1 Score: 186 bits (471), Expect = 3.870e-50 Identity = 122/286 (42.66%), Postives = 164/286 (57.34%), Query Frame = 3
Query: 90 TLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDH--G*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*S----ERRSEGSCGATTDCTMCRSVFESPGGAKR 908
+ F D+++ K+ +K E+ ++FDL+G+DA+IANALRRILLAEV T+AIEHVY++ E++ H R P +DP G S N + ++ + ++L TC+ + P +V+S +EW P G Q ERF G +RPVHDDILIAKLRP Q + E HCRKGIGKDHAKFSPVATASYRL+P V L E+IE DA L+ CP+N+FDIED+G S ++R+ CTMCR+ PG K+
Sbjct: 25 SYSFVDQSKSKVKIKLQRLT---EDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLNVDPREFQGFSDNE---------EAEATDENTIVFKLDV-----TCKFDPEHPKD-PTKAIFSSVYSRDLEWVPQGNQEERF---GLIRPVHDDILIAKLRPGQSLALEAHCRKGIGKDHAKFSPVATASYRLMPKVELSEKIEGADAVSLMENCPVNLFDIEDVGGVQSIVVKDQRA---------CTMCRNCIREPGWDKK 278
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.660e-49 Identity = 130/303 (42.90%), Postives = 169/303 (55.78%), Query Frame = 3
Query: 36 DAPSEVFEAASDKERLDRTLG--FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTM---NVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESPG 896
DAP V AA+ + +LG F ++++R++ +K D +E+ FDL+GVDASIANALRRILLAEV T+AIEHVY++ E++ H R P R+DP R Q H + K + C A P+ +V+S +EW P G Q ERF G +RPVH+DILIAKLRP Q I E HCRKG+GKDHAKFSPVATASYRL+P V L E +E DDA+ LV +C + +FDIED+G A ++R+ CTMCR+ PG
Sbjct: 15 DAPHVVRNAAAFE-----SLGSDFVEQSKRQVKVKIQSLTD---DEIQFDLMGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLRVDP---------------REFQAFPDHEEAEATDENTIVFKL-DVTCAYDPAHPKDLSKAVHASVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQMGLFDIEDMGGVPTAVVKDQRA---------CTMCRNCIREPG 279
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM) HSP 1 Score: 179 bits (455), Expect = 1.730e-47 Identity = 118/284 (41.55%), Postives = 167/284 (58.80%), Query Frame = 3
Query: 90 TLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSS-WRLSTPPASKTCQIRCRRGRACPR-PRRTMN--VFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESPG 896
+ F ++++R++ +K D +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ E++ H R P ++DP R + ++ +T ++ ++L + C+ P+ P + ++ V+S +EW P G Q ERF G +RPVH+DILIAKLRP Q I E HCRKG+GKDHAKFSPVATASYRL+P V E++E DA+ LV C + +FDIED+G A ++R+ CTMCR+ PG
Sbjct: 58 SYSFVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLKVDP--------REFQAFPDNEEAEATDENTIVFKL---------DVTCKYDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERF---GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIEDIGGVPTAVVKDQRA---------CTMCRNCIREPG 307
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT) HSP 1 Score: 178 bits (452), Expect = 1.830e-47 Identity = 117/280 (41.79%), Postives = 164/280 (58.57%), Query Frame = 3
Query: 90 TLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSS-WRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESP 893
+ F ++++R++ +K D +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ E++ H R P +DP R + ++ +T ++ ++L TC+ + P +V+S +EW P G Q ERF G +RPVH+DIL+AKLRP Q I E HCRKG+GKDHAKFSPVATASYRL+P V L E++E DA+ LV +C + +FDIED+G A ++R+ CTMCR+ P
Sbjct: 21 SYSFVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLIPLNVDP--------REFQAFPDNEEAEATDENTIVFKLDV-----TCKFDPEHPKD-PTKAIHSSVYSRDLEWVPQGNQEERF---GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIEDIGGVPTAVVKDQRA---------CTMCRNCIREP 269
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA) HSP 1 Score: 177 bits (448), Expect = 8.650e-47 Identity = 121/280 (43.21%), Postives = 164/280 (58.57%), Query Frame = 3
Query: 96 GFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSS-WRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVA-KCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESPG 896
G+ ++ ++++ +K ++++ E E+VFDL+GVDASIANALRRILLAEV T+AIEHVY++ E++ H R P +DP R + ++ +T ++ ++L TC+ + + T +V+S +EW P G Q ERF G +RPVH+DILIAKLRP Q I E HCRKG+GKDHAKFSPVATASYRL+P + L + + DA +LVA KC L VFDIEDLG A + RS C MCR PG
Sbjct: 29 GYVEQLKKQVKVK-IQSLS--EEEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLNVDP--------REFQAFPDNEEAEATDENTIVFKLDV-----TCRFDPAHPQDAAKALHT-SVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIEDLGGVDTAVVKDARS---------CNMCRECIREPG 277
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA) HSP 1 Score: 175 bits (444), Expect = 2.380e-46 Identity = 118/273 (43.22%), Postives = 152/273 (55.68%), Query Frame = 3
Query: 99 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPG 896
F D ++++ +K D +E+VFDL+G+DASIANA RRILLAEV T+AIEHVY++ E++ H R P ++DP + G D+ +T V T S I +A +V+S +EW P G Q ERF G +RPV +DILIAKLRP Q I E HCRKG+GKDHAKFSPVATASYRLLP ++ + DA+ L CP+NVFDIEDL A + R+ CTMCR +PG
Sbjct: 26 FVDNFKKQLKVKIQSLTD---DEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAH--RLGLIPLQVDPRE--FQSFPEHEEGEATDE--NTLVFKLDVTCTADPSDPNDI----SKAT-----NASVYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIEDLAAVAARPRN---------CTMCRECIRAPG 268 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8484.1.4 >prot_A-nodosum_M_contig8484.1.4 ID=prot_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp MKRAKVGGKLWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRMback to top mRNA from alignment at A-nodosum_M_contig8484:3985..8908+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8484.1.4 ID=mRNA_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4924bp|location=Sequence derived from alignment at A-nodosum_M_contig8484:3985..8908+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8484:3985..8908+ >mRNA_A-nodosum_M_contig8484.1.4 ID=mRNA_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig8484:3985..8908+ (Ascophyllum nodosum dioecious)back to top |