mRNA_A-nodosum_M_contig8484.1.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8484.1.4
Unique NamemRNA_A-nodosum_M_contig8484.1.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 2.870e-94
Identity = 182/300 (60.67%), Postives = 208/300 (69.33%), Query Frame = 3
Query:   30 KNDAPSEVFEAASDKERLDRTL-GFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSS-SWRLSTP--PASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPG 896
            KNDAPSEVFEAAS++ER DR L  +A+R  + +D+KAV++  G  NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMF        E++ H  R    P   +P         V   GG  D+ +  +       +  P  PA     +      A   PRRTMNVFSGAMEWCPHG QVERFE +GGLRPVHDDILIAKLRP QEIVAE+HCRKGIGKDHAKFSPVATASYRLLPVV+LKEE+E  +AEELVAKCPLNVFDIEDLG   + +R++       DCTMCR     PG
Sbjct:   11 KNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAH--RLGLIPIMANP----RMFEFVGEEGGEQDEPTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAG-PRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGG--AGKRAK--VARPRDCTMCRECIREPG 299          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.910e-85
Identity = 173/314 (55.10%), Postives = 205/314 (65.29%), Query Frame = 3
Query:   30 KNDAPSEVFEAASDKERLDRTL-GFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDP-------DHG*SAN--------VRVRRRGGR--GDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPG 896
            KNDAPSEVFEAAS++ER DR L  +A+R  + +D+KAV +  G +NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMF        E++ H  R    P   +P       D G   +        VRV+  G +  G    +   +  + L    A+   +++                  GAMEWCPHG QVERFE +GGLRPVHDDILIAKLRP QEIVAE+HCRKGIGKDHAKFSPVATASYRLLPVV+LK+E+E  +AEELVAKCPLNVFDIEDLG   + +R++       DCTMCR     PG
Sbjct:   11 KNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAH--RLGLIPIMANPRMFEFVGDEGGEQDEATDGVQHVRVQAGGEKPGGPGGHAGPYADGYELCGGAATDHERLQV-----------------GAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIEDLGG--AGKRAK--VARPRDCTMCRECIREPG 301          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.650e-53
Identity = 132/314 (42.04%), Postives = 169/314 (53.82%), Query Frame = 3
Query:   30 KNDAPSEVFEAASDKERLDRTLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYM-------FAELVDHPRRDPCAPTRIDPDHG*SANVRVRRRG------GRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRR--------TMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPGGAKR 908
            + DAP  VF AA   +  +R L + ++ RR++ +   +       ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM       F E++ H  R    P  +DP     + V   R+        R   +   +   +    T    +   +  R  R C RP          T  V+SG  EW P G Q ERF    GLRP+HDDIL+AKLR  QEI  E+HCRKG+GKDHAK+SPVATASYRL P ++L + +    A ELVA CP+NVFDIED G       +        DCTMCR     PG A+R
Sbjct:    9 RGDAPHRVFSAAKP-DPAERGLRYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSH--RLGLVPLNVDPRT--FSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED-GEXXXXXGAVAVVARPRDCTMCRECIRPPGWAER 311          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.040e-51
Identity = 130/316 (41.14%), Postives = 169/316 (53.48%), Query Frame = 3
Query:    9 SCNQVQDKNDAPSEVFEAASDKERLDRTLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYM-------FAELVDHPRRDPCAPTRIDP---------DHG*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPGGAKR 908
            S  + Q KN   SE F+  S          F+DR    ++   +E ++  E ELVFDL+GVDAS+ANALRRI+LAEV T+AIE+VY+         E++ H  R    P ++DP         D   S N  V              V  S    T P   T                TM+V+S  ++W P   Q E F    G+RPVH+DIL+AKLRP Q I  E HC++G+GKDHAKFSPVATASYRLLP + + +E++ + AE+L A CP+NVFDIEDLG    ERR+  +     DCTMCR      G  +R
Sbjct:    8 SIRRYQVKNQGVSEEFQPVSAAADASVHRPFSDRL---LEGMRIEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAH--RLGLVPIQVDPRLFKDKVPQDEINSKNTVV----------FGLDVQCSRSADTRPPGSTEPY-------------TMSVYSKHLQWLPQADQAEEFPD--GIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGG---ERRA--TAARPRDCTMCRECIRQEGWDER 288          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL)

HSP 1 Score: 186 bits (471), Expect = 3.870e-50
Identity = 122/286 (42.66%), Postives = 164/286 (57.34%), Query Frame = 3
Query:   90 TLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDH--G*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*S----ERRSEGSCGATTDCTMCRSVFESPGGAKR 908
            +  F D+++ K+ +K        E+ ++FDL+G+DA+IANALRRILLAEV T+AIEHVY++        E++ H  R    P  +DP    G S N          +  ++   +  ++L       TC+      +  P      +V+S  +EW P G Q ERF   G +RPVHDDILIAKLRP Q +  E HCRKGIGKDHAKFSPVATASYRL+P V L E+IE  DA  L+  CP+N+FDIED+G   S    ++R+         CTMCR+    PG  K+
Sbjct:   25 SYSFVDQSKSKVKIKLQRLT---EDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLNVDPREFQGFSDNE---------EAEATDENTIVFKLDV-----TCKFDPEHPKD-PTKAIFSSVYSRDLEWVPQGNQEERF---GLIRPVHDDILIAKLRPGQSLALEAHCRKGIGKDHAKFSPVATASYRLMPKVELSEKIEGADAVSLMENCPVNLFDIEDVGGVQSIVVKDQRA---------CTMCRNCIREPGWDKK 278          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.660e-49
Identity = 130/303 (42.90%), Postives = 169/303 (55.78%), Query Frame = 3
Query:   36 DAPSEVFEAASDKERLDRTLG--FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTM---NVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESPG 896
            DAP  V  AA+ +     +LG  F ++++R++ +K     D   +E+ FDL+GVDASIANALRRILLAEV T+AIEHVY++        E++ H  R    P R+DP               R  Q    H  +          K   + C    A P+        +V+S  +EW P G Q ERF   G +RPVH+DILIAKLRP Q I  E HCRKG+GKDHAKFSPVATASYRL+P V L E +E DDA+ LV +C + +FDIED+G    A   ++R+         CTMCR+    PG
Sbjct:   15 DAPHVVRNAAAFE-----SLGSDFVEQSKRQVKVKIQSLTD---DEIQFDLMGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLRVDP---------------REFQAFPDHEEAEATDENTIVFKL-DVTCAYDPAHPKDLSKAVHASVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQMGLFDIEDMGGVPTAVVKDQRA---------CTMCRNCIREPG 279          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 179 bits (455), Expect = 1.730e-47
Identity = 118/284 (41.55%), Postives = 167/284 (58.80%), Query Frame = 3
Query:   90 TLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSS-WRLSTPPASKTCQIRCRRGRACPR-PRRTMN--VFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESPG 896
            +  F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++        E++ H  R    P ++DP        R  +     ++  +T  ++  ++L          + C+     P+ P + ++  V+S  +EW P G Q ERF   G +RPVH+DILIAKLRP Q I  E HCRKG+GKDHAKFSPVATASYRL+P V   E++E  DA+ LV  C + +FDIED+G    A   ++R+         CTMCR+    PG
Sbjct:   58 SYSFVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLKVDP--------REFQAFPDNEEAEATDENTIVFKL---------DVTCKYDPEHPKDPTKAIHSSVYSRDLEWVPQGNQEERF---GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIEDIGGVPTAVVKDQRA---------CTMCRNCIREPG 307          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 178 bits (452), Expect = 1.830e-47
Identity = 117/280 (41.79%), Postives = 164/280 (58.57%), Query Frame = 3
Query:   90 TLGFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSS-WRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESP 893
            +  F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++        E++ H  R    P  +DP        R  +     ++  +T  ++  ++L       TC+      +  P      +V+S  +EW P G Q ERF   G +RPVH+DIL+AKLRP Q I  E HCRKG+GKDHAKFSPVATASYRL+P V L E++E  DA+ LV +C + +FDIED+G    A   ++R+         CTMCR+    P
Sbjct:   21 SYSFVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLIPLNVDP--------REFQAFPDNEEAEATDENTIVFKLDV-----TCKFDPEHPKD-PTKAIHSSVYSRDLEWVPQGNQEERF---GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPKVELMEKVEGTDAKRLVEECQIGLFDIEDIGGVPTAVVKDQRA---------CTMCRNCIREP 269          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 177 bits (448), Expect = 8.650e-47
Identity = 121/280 (43.21%), Postives = 164/280 (58.57%), Query Frame = 3
Query:   96 GFADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSS-WRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVA-KCPLNVFDIEDLG----AG*SERRSEGSCGATTDCTMCRSVFESPG 896
            G+ ++ ++++ +K ++++   E E+VFDL+GVDASIANALRRILLAEV T+AIEHVY++        E++ H  R    P  +DP        R  +     ++  +T  ++  ++L       TC+      +   +   T +V+S  +EW P G Q ERF   G +RPVH+DILIAKLRP Q I  E HCRKG+GKDHAKFSPVATASYRL+P + L + +   DA +LVA KC L VFDIEDLG    A   + RS         C MCR     PG
Sbjct:   29 GYVEQLKKQVKVK-IQSLS--EEEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAH--RLGLVPLNVDP--------REFQAFPDNEEAEATDENTIVFKLDV-----TCRFDPAHPQDAAKALHT-SVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIEDLGGVDTAVVKDARS---------CNMCRECIREPG 277          
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.380e-46
Identity = 118/273 (43.22%), Postives = 152/273 (55.68%), Query Frame = 3
Query:   99 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFA-------ELVDHPRRDPCAPTRIDPDHG*SANVRVRRRGGRGDQRSSTHVSSSWRLSTPPASKTCQIRCRRGRACPRPRRTMNVFSGAMEWCPHGAQVERFEQDGGLRPVHDDILIAKLRPRQEIVAELHCRKGIGKDHAKFSPVATASYRLLPVVSLKEEIEDDDAEELVAKCPLNVFDIEDLGAG*SERRSEGSCGATTDCTMCRSVFESPG 896
            F D  ++++ +K     D   +E+VFDL+G+DASIANA RRILLAEV T+AIEHVY++        E++ H  R    P ++DP      +      G   D+  +T V       T   S    I     +A        +V+S  +EW P G Q ERF   G +RPV +DILIAKLRP Q I  E HCRKG+GKDHAKFSPVATASYRLLP ++    +   DA+ L   CP+NVFDIEDL A  +  R+         CTMCR    +PG
Sbjct:   26 FVDNFKKQLKVKIQSLTD---DEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAH--RLGLIPLQVDPRE--FQSFPEHEEGEATDE--NTLVFKLDVTCTADPSDPNDI----SKAT-----NASVYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIEDLAAVAARPRN---------CTMCRECIRAPG 268          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8484.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI2.870e-9460.67DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE1.910e-8555.10DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A836C8K2_9STRA1.650e-5342.04DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2RJI0_9STRA1.040e-5141.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0P1AUD4_PLAHL3.870e-5042.66DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A662X4Y9_9STRA1.660e-4942.90DNA-directed RNA polymerases I and III subunit RPA... [more]
H3GV90_PHYRM1.730e-4741.55DNA-directed RNA polymerases I and III subunit RPA... [more]
D0NVB2_PHYIT1.830e-4741.79DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA8.650e-4743.21DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA2.380e-4643.22DNA-directed RNA polymerases I and III subunit RPA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8484contigA-nodosum_M_contig8484:3985..8908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPF8
Preferred namePOLR1C
PFAMsRNA_pol_A_bac,RNA_pol_L
Model size1718
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523,RC02795
KEGG koko:K03027,ko:K08059,ko:K13196,ko:K14163,ko:K18715
KEGG TC1.I.1
KEGG ReactionR00435,R00441,R00442,R00443,R03661,R05578
KEGG Pathwayko00230,ko00240,ko00860,ko00970,ko01100,ko01110,ko01120,ko03020,ko04612,ko04623,ko05169,map00230,map00240,map00860,map00970,map01100,map01110,map01120,map03020,map04612,map04623,map05169
KEGG ModuleM00121,M00181,M00182,M00359
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015074,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070893,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons8
Evalue8.32e-33
EggNOG OGsCOG0202@1|root,KOG1521@2759|Eukaryota
EC6.1.1.15,6.1.1.17
Descriptiontranscription by RNA polymerase I
Cds size279
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03021,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8484.1.4prot_A-nodosum_M_contig8484.1.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8484 7411..8283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870223.804253-UTR-A-nodosum_M_contig8484:3984..40671680870223.804253-UTR-A-nodosum_M_contig8484:3984..4067Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 3985..4067 +
1680870223.8192494-UTR-A-nodosum_M_contig8484:4592..47441680870223.8192494-UTR-A-nodosum_M_contig8484:4592..4744Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 4593..4744 +
1680870223.834383-UTR-A-nodosum_M_contig8484:5249..53961680870223.834383-UTR-A-nodosum_M_contig8484:5249..5396Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 5250..5396 +
1680870223.8457637-UTR-A-nodosum_M_contig8484:6279..64081680870223.8457637-UTR-A-nodosum_M_contig8484:6279..6408Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 6280..6408 +
1680870223.8563232-UTR-A-nodosum_M_contig8484:6751..68781680870223.8563232-UTR-A-nodosum_M_contig8484:6751..6878Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 6752..6878 +
1680870223.867181-UTR-A-nodosum_M_contig8484:7234..74101680870223.867181-UTR-A-nodosum_M_contig8484:7234..7410Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 7235..7410 +
1680870223.9278882-UTR-A-nodosum_M_contig8484:8283..89081680870223.9278882-UTR-A-nodosum_M_contig8484:8283..8908Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8484 8284..8908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870223.8800654-CDS-A-nodosum_M_contig8484:7410..74391680870223.8800654-CDS-A-nodosum_M_contig8484:7410..7439Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8484 7411..7439 +
1680870223.8990364-CDS-A-nodosum_M_contig8484:7729..78711680870223.8990364-CDS-A-nodosum_M_contig8484:7729..7871Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8484 7730..7871 +
1680870223.9124238-CDS-A-nodosum_M_contig8484:8175..82831680870223.9124238-CDS-A-nodosum_M_contig8484:8175..8283Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8484 8176..8283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8484.1.4

>prot_A-nodosum_M_contig8484.1.4 ID=prot_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
MKRAKVGGKLWRDHGLHHVQECIREPGWSEKVSLSRIADHFIFGIESVRM
LPPRWRKELLKDSIQVLRQKCDSLLAEVEAFESGADLERAMS*
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mRNA from alignment at A-nodosum_M_contig8484:3985..8908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8484.1.4 ID=mRNA_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4924bp|location=Sequence derived from alignment at A-nodosum_M_contig8484:3985..8908+ (Ascophyllum nodosum dioecious)
ATGCATGGTCGTGTAACCAAGTACAGGATAAAAATGATGCCCCGTCCGAG GTATTCGAGGCCGCGAGCGACAAAGAGCGGCTGGTGAGTTCGATTGACAT GACTCGCAGCTTACCTCCTCCCTCTTATCGATGCAAGGTTAATTCAGATC GCTGGCGCGTGTTGTATCCGAGAGCAAATCAACGCTTTTCCACCAACTCC ATCTCAAGGACCACACATCCATACATCCTTGCACTTATAGTTTTATACGT ACGGTACAAATGTCCCTGGGGTCGGTAACGTTGATGCCTGATGCCATGGC GACACTATTGACTCGAGTCGAACAAAGCGAGGTGATCAATCTATTCACCC AGGTCATACAACGAAATGATACGAGGAATATTTCTTCGATCCATCCACCG CATCGAAAGTAATCGTTTGACGATCTCAGGCGCAGACCAGCACACACCCG CGCTTTTGAAATCTGAACTCCTCGAGTCAAATATATAGTAAAAAAAGAGA CACTCTGTGGTACAAAGTTATCCAGAGTACGAGTGTACCGGTTTTGAACC CCTATTGTACCTCGAAAACTGCTGTCGTCTTCTGGTCGCGGGTCTCTCCT GCCGACAGGACCGAACGCTGGGGTTCGCGGACCGCGCTAGGAGGAAAATC GATCTCAAGGCGGTGGAGACTGTCGACGGCGACGAGAATGAGCTGGTGTT CGATCTCGTGGGCGTCGATGCTTCCATCGCGAACGCCTTGAGACGAATCT TACTCGCCGAGGTGACATGCCGCCTGCTTTCCTACCCCCCCGCCTTCGCA GATCCACATTCTCTCAGAGGCGAGAACGGAGACAGGGAGAAAAAACATTT TCCATGTCTAGCTGACCACGAGGAGGGTTGGCTTATCACATGAACACACC ATGCTGTCGTGCGGTCCGTTGGAACCAGCGGTTTGCGCCCTGAGTGCAAT CGGTGGAATGCAATCCTAGAGCTACGCACGAGCTACTTTACATCCAGCTG CTCTCTCTAGTGTACCTTCATCCGCTTCGCTCTTTGCTAAATAGTCGTTC TCAACGCTTATGTATTCTGAAAATATCGTACAGGTATCTAATCGTTTGGA AAAGAAATTGTCGGGTACAAAAGCAAAACTCTTTCTCGGAGTAGGCGCCA TATATTTACGAGTACAATCGTCCAGTCAGCGGGAGGGCAGCCTGATTGGC GATGAAGGGGCGAGCTTGTTGGTCGCTGTTGTTCATTTTCTCCCTCTGTT TCTTTGCACACACATGGTGGCAACGGTTGCCATCGAGCACGTCTACATGT TCGCTGAACTCGTCGATCATCCACGACGAGATCCTTGCGCACCGACTAGG ATTGATCCCGATCATGGCTAATCCGCGAATGTTCGAGTTCGTCGGCGAGG AGGAAGAGGCGAGTGAGTTGTGCGACAATGTCCTCAGTTCCGGTTGGCAT TCCACGTGCTCCTTCCATCTTGCGAAATCCAATCTTGTTCTTCTTCCGAG GGGAGAGCCCTCCTCTCTTTCGGAAATGAGAGAGAATGGGCAGGCCGCAT CACCGAGGGAACCCCGTTCGTCCAGCCGGCGCAGGATGCTCAGTGTCTTT GTGTCAATGATTTGTTTTCGCTCGATACATGACCACGCACGCTCATCACA CCCTTCCTTCCCAGCGATTCCCACGGAAGGCGGGTAACGAAGCTTGTGCA ACAGAAACGCTCGGGACCTCGTGACTGCAGTGTCCTGGACGGTGACTTTG CTCTGTAGCTTCGACGTACGCGTCTCGCCGCGCCAGAGCAATAACCCCGT CCCACATTACCCCCATACCCCATCCCCTTCGTCAAAGTTTCATGATGAAA TAGGATAATAACACTCTAATGCATTGATACGAAACTGTCGCGGTGCTCTA TTCTTGGACGGGATAGATCCGTCGCGGTTTTATAATGTATGCACAAGATT TGTGCTGTCGCGCGCTCGCCGCTTGCGAGCCTCCTTGAACAAAAGCATGT GCTGTTAGTACGTAGTCCGCCCTACACCACACGCAGATTTCAGCATTATT CATGCACCGTTGCAACCATGTAAAAGTATAACAGCAGTGATTGTCATGAC TGAAATATCTTTGTGAGAGACGAGGAATTCCCCTCGAGTTGGCGGTGGCG CGACCTCGTCTCTTTGGACGATAGACGTCGTTGTTCGCATTTACAGCAGA TTGTTTCATCTCCGCACCGTCGTAAGGACCTTATGACGCCATCGTACCAC CACTTCCTCTTCTCTCTTGGCGTATGCGCCGCACCGCGTCCGTAGCCAGC GGAGTTCAACACATGTGTCTTCAAGCTGGAGGTTAAGCACCCCGCCAGCT TCGAAGACATGCCAGATCCGTTGCCGAAGGGGACGAGCATGCCCCCGGCC CCGGCGCACCATGAACGTCTTCAGGTACATACCTGGGTACTGTATTTTAC TGCGTAATCTCACTCCTGATAAAGGGTGGGTGGGGGCAGTGTTCAGAACG TCCCCCGAGGCGCACTTTCCTAAGACATCTCTTGTGTGAGACTGAGGCGG CGCTCGCGATCTTGTAGGCCTTTCAAGTACACAAGAGCCGAGAGGGCCAT GTTTCGAGGCCGCTGGCTTACAGTAGCAATTACTGTAATGAAATCGTACG AAACACCCTCATTCCCTTCAATACATTCATGTAGTATAAAGAGCGCCGCA GTGATTAGCTCCTTCGTGCCTTTCTGACTTGCGTGTCGTTATTATATTAC TGTATGTAATGCTGAAGCGGCGCGATGGAGTGGTGTCCGCACGGCGCTCA GGTAGAGCGCTTCGAGCAGGATGGCGGGCTGAGACCCGTGCATGACGACA TCCTGATCGCCAAGCTGCGGCCGAGGCAAGAGATCGTAGCCGAGGTAACG CGCACACTCGCACTGCGCCGTGTGGGCTATTAAATAGTTCATGTACCCGT AGAGGTTTGGTTTTATTCTGGCGAAAAGGTCCCGTCTGTGTCTTTTGCTT CTTGTTTTCGCCAGACTCTTTCCCAACCGGTGCACATGGATGGACCTAGC AAAGCAAGGCAAGAGCACCGGTGCATGGGAGAGGACACCCAACTATCAAT ACTACTGAAGTCAAAATCGATTGAACAATGATTGAAAAAAATACTTACAC AAGTAGGATCCTCTCTTTTGACTCCGCGTTTGCGGTTTGATTCCAAGTGT CGTCGTGTGTGTGTGTTCCTCGCGTGTTTATGTTCGCGTGCGTCGTGCAG CTGCATTGCCGCAAGGGCATTGGAAAAGACCACGCCAAGTTCTCCCCGGT GGCCACAGCGAGCTACCGCCTTCTCCCGGTAGTGTCCCTCAAGGAAGAGA TAGAGGATGACGACGCCGAAGAGCTCGTGGCCAAGTGCCCGTTGAACGTG TTCGATATCGAGGATCTGGGGGCGGGATGAAGCGAGCGAAGGTCGGAGGG AAGTTGTGTTGGGGTGAATGAGGCGCGTTCAATAAGGACATGCCGTGGCC GCCTTGTCGTGTTACCAAATCATCCCAAGCACGGATTTTTGAGGTTGCCT ACAGATAGTTATACGACTATGAAGGAGTAGTTTTATTTCTCGAGTTGATG GCCCGTCAAATTCTTTATCGAGGGGTGACAACTCCAATTTAAGCGATCGA CGAGACTTTCTCCCATCGCTGTATTGTCTTGTCATCGGTAATATACCTCT GTATGTTTATGTATATGTGTGTGTGTCCGCGCACGCCGTGTTCAGGTGGC GCGACCACGGATTGCACCATGTGCAGGAGTGTATTCGAGAGCCCGGGTGG AGCGAAAAGGTGTCCCTGTCAAGGATCGCCGATCACTTCATCTTCGGAAT CGAGTCCGTCAGGATGCTTCCTCCAAGGTGGAGAAAAGTTAATACTGTAG AGCTATATAGATTCCTCTGTGACACTAAAGTCGTGATTCCTCCCTTATGC TTTTCTTGACAAGGAAATTCGCCCATATCTTCCACGGGCAATCATTGAGC TGCTGACCCATTGCATTGAAGGTAAATGATGTATTATCAGTTTCAGCATT TCGACAGTTTCACCATCTTACGCTGCGGAATACAACACGATCACGTATTC GCGGCGCGTTATCTCGTCGCTGCAAACGCTTCGACTTCACCCGCTCTCCC ATCTTCCGCATGACGTCACGCTTGGCGTGTGTATACTGTAGGAACTCCTC AAGGACAGCATCCAAGTTTTGAGGCAAAAGTGCGACTCTTTGTTGGCGGA GGTGGAGGCGTTCGAATCAGGGGCAGACTTGGAGAGGGCGATGTCGTGAC TTGGTTTCTTGTGCGCGACGAAAACGAAGCGGGTAGCGGTTGGTCGAAGC TTTCGATAGAGCTTGATTGTAAGTGCGGAGGGCGTACGCGGTTTAACCCA GTTGCCGGGGAACCAAATTCTCTTAAATCCATAATTTGGTTCGTTCGTGT GAATGATGAGCTAGCTCTGTGCTATATTAATAGCAGGTACGGAGCCTCTA GTTTAAGGGGGTCCCGTGTGCAGTTTGCATTTGTTACGAGCGTGTATCTT CGATCGCTGCATGTTTTTGTTTGTTTGATGTTTTTCCCATGCCGTTGTGT TGCCAGGTTTGTATCTTGTCAACGAGATGGCGACGCTGCTCCCGCCAGTT AAGAGAAGTACACGTCTTTCTCTTCTCCAATGGGCTTGTCTTTCGCTTTT ATTGTTGTGGCTTGTAGGGCGTAACGTGCCGGTTTGACGATCTCCGAAGG CCACAGCATATCTCTGACATGTATCTATTTGGGGCAGATAAACGTTTGTT TCGATGCATTCAACCGCCGCTCAGCATCATTCTTTCATCTCTATTGTCAC GTCGGACACTCCAGCGCAGTGTAATTTTTGCATTGCCGTGTTTTTCCCTC CATAAAAAAATTGAGCCCTCTTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8484:3985..8908+

>mRNA_A-nodosum_M_contig8484.1.4 ID=mRNA_A-nodosum_M_contig8484.1.4|Name=mRNA_A-nodosum_M_contig8484.1.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig8484:3985..8908+ (Ascophyllum nodosum dioecious)
ATGAAGCGAGCGAAGGTCGGAGGGAAGTTGTGGCGCGACCACGGATTGCA
CCATGTGCAGGAGTGTATTCGAGAGCCCGGGTGGAGCGAAAAGGTGTCCC
TGTCAAGGATCGCCGATCACTTCATCTTCGGAATCGAGTCCGTCAGGATG
CTTCCTCCAAGGTGGAGAAAAGAACTCCTCAAGGACAGCATCCAAGTTTT
GAGGCAAAAGTGCGACTCTTTGTTGGCGGAGGTGGAGGCGTTCGAATCAG
GGGCAGACTTGGAGAGGGCGATGTCGTGA
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