prot_A-nodosum_M_contig847.22.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig847.22.1
Unique Nameprot_A-nodosum_M_contig847.22.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length72
Homology
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.530e-14
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0
Query:    1 MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFEQRDSNV 71
            MHLS  ++  VR F    LVDIR +F    G   PTKKGIALTIPQW+RL+ A+ DID  +   E++  ++
Sbjct:    5 MHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 75          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.250e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0
Query:    2 HLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFEQRDSNV 71
            HLS  ++V VR F    LVDIR +F    G  +PTKKGIALTIPQW+RL+ A+ DID  +   E++  ++
Sbjct:  136 HLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 205          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A7M7G0M9_STRPU (PC4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7G0M9_STRPU)

HSP 1 Score: 68.6 bits (166), Expect = 2.790e-13
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 64
            LS  + V VR F   VL+DIR ++  E GD++P KKGI+LT+ QW++L + V DID R++E 
Sbjct:   53 LSRQRFVNVREFRGKVLIDIREYYEKEVGDLLPGKKGISLTVDQWRKLVSQVDDIDSRIEEM 114          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI001BB2BB0F (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BB0F)

HSP 1 Score: 65.1 bits (157), Expect = 5.820e-12
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 64
            LS  + V VR F   VL+DIR ++  E GD+ P KKGI+LT+ QW++L   + DID R++E 
Sbjct:   49 LSRQRFVNVREFRGKVLIDIREYYEPEVGDLRPGKKGISLTVDQWRKLVNQIDDIDARIEEM 110          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A1Y1YTM3_9FUNG (Putative single-stranded DNA binding protein P9 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YTM3_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.490e-10
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 64
            LS  K + VR++ + VLVD R FF +  G + PTKKGI L++ QWK+LK    ++D  + + 
Sbjct:   55 LSSKKRLSVRKWKNMVLVDFREFFTDSNGVVRPTKKGITLSLDQWKKLKELANEVDDAIDQL 116          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A443SIF6_9ACAR (Activated RNA polymerase II transcriptional coactivator p15-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SIF6_9ACAR)

HSP 1 Score: 59.3 bits (142), Expect = 4.890e-10
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDID 58
            LS N+ V V  F     +DIR ++ NE G+  P KKGI+L++P+WK+LK  + DID
Sbjct:   14 LSNNRFVTVSEFRHKKRIDIREYYVNESGEKKPGKKGISLSLPEWKKLKELIHDID 69          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI0014259BD3 (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BD3)

HSP 1 Score: 60.1 bits (144), Expect = 4.990e-10
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFE 65
            LS  + V VR F   VL+DIR ++   GG++ P KKGI+L++ QWK+LK  V D+D  ++E +
Sbjct:   47 LSRTRFVNVREFKGKVLIDIREYYE-AGGEMKPGKKGISLSVDQWKKLKEVVDDVDDSIKELQ 108          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A833VYQ0_9POAL (RNA polymerase II transcriptional coactivator KIWI-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VYQ0_9POAL)

HSP 1 Score: 59.3 bits (142), Expect = 1.000e-9
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 64
            +S NK + VR +N  V+VD R +F  +G  + PTKKGI+L++ QWK L+  + +ID  VQE+
Sbjct:   46 VSKNKRITVRNWNGNVMVDFREYFVKDGKQL-PTKKGISLSMDQWKILRDHIEEIDDVVQEY 106          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI00083FE0AF (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI00083FE0AF)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-9
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    3 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQ 62
            L  N++V VR F   +LVDIR  + +  G+  P KKGIALT+PQW++L   + D+D  V+
Sbjct:   71 LGNNRKVMVRDFKGKLLVDIREMYFDNAGNTKPGKKGIALTMPQWRKLLDIIEDVDEAVK 130          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A8J9ZET2_BRALA (SUB1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZET2_BRALA)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-9
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFE 65
            + LS  + + VR F    L+DIR +++ +G ++ P +KGI+L+  QW++LKAA+ DID ++Q  E
Sbjct:   17 LQLSNKRFISVREFKGKCLIDIREYYDADG-ELKPGRKGISLSKDQWQKLKAAMEDIDEKIQAIE 80          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS7_ECTSI3.530e-1447.89PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LB71_9PHAE1.250e-1348.57PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7M7G0M9_STRPU2.790e-1348.39PC4 domain-containing protein n=1 Tax=Strongylocen... [more]
UPI001BB2BB0F5.820e-1246.77activated RNA polymerase II transcriptional coacti... [more]
A0A1Y1YTM3_9FUNG1.490e-1041.94Putative single-stranded DNA binding protein P9 n=... [more]
A0A443SIF6_9ACAR4.890e-1046.43Activated RNA polymerase II transcriptional coacti... [more]
UPI0014259BD34.990e-1044.44activated RNA polymerase II transcriptional coacti... [more]
A0A833VYQ0_9POAL1.000e-945.16RNA polymerase II transcriptional coactivator KIWI... [more]
UPI00083FE0AF1.220e-945.00activated RNA polymerase II transcriptional coacti... [more]
A0A8J9ZET2_BRALA1.500e-940.00SUB1 protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4), C-terminalPFAMPF02229PC4coord: 2..52
e-value: 4.9E-18
score: 64.5
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10Transcriptional Coactivator Pc4; Chain Acoord: 1..64
e-value: 1.7E-19
score: 71.2
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILY54447ssDNA-binding transcriptional regulator domaincoord: 2..63
NoneNo IPR availablePANTHERPTHR13215:SF0ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15coord: 2..65
IPR045125RNA polymerase II transcriptional coactivator Sub1/Tcp4-likePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 2..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig847contigA-nodosum_M_contig847:247909..248124 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig847.22.1mRNA_A-nodosum_M_contig847.22.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig847 247721..249319 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig847.22.1 ID=prot_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRL
KAAVRDIDVRVQEFEQRDSNV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003173PC4_C
IPR009044ssDNA-bd_transcriptional_reg
IPR045125Sub1/Tcp4-like