mRNA_A-nodosum_M_contig847.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig847.22.1
Unique NamemRNA_A-nodosum_M_contig847.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.550e-15
Identity = 58/156 (37.18%), Postives = 78/156 (50.00%), Query Frame = 3
Query:    3 PAHKSATANLSSNKGTVEWAAFEREAPP-------LPAGEAYGPYS------------NASSPKTAPSEQYK----PDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFEQRDSNV 401
            PA++ A AN ++       A  +R A P       +P GEAY P S            N  S  T  S+       P  FD+ S  HLS  ++V VR F    LVDIR +F    G  +PTKKGIALTIPQW+RL+ A+ DID  +   E++  ++
Sbjct:   50 PAYQQAAANATAPTPWTPTATGDRWAQPGGPSPGTMPMGEAYKPSSSSKMYGGRSSSSNGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 205          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.170e-12
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query:  177 LSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFEQRDSNV 401
            + S MHLS  ++  VR F    LVDIR +F    G   PTKKGIALTIPQW+RL+ A+ DID  +   E++  ++
Sbjct:    1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 75          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A7M7G0M9_STRPU (PC4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7G0M9_STRPU)

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  165 DVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
            D  D S    LS  + V VR F   VL+DIR ++  E GD++P KKGI+LT+ QW++L + V DID R++E 
Sbjct:   43 DENDTSEMFSLSRQRFVNVREFRGKVLIDIREYYEKEVGDLLPGKKGISLTVDQWRKLVSQVDDIDSRIEEM 114          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI001BB2BB0F (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BB0F)

HSP 1 Score: 71.2 bits (173), Expect = 1.840e-11
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  108 GPYSNASSPKTAPSEQYKP-----DVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
            G  S+  +PK A +   KP     D  D S+   LS  + V VR F   VL+DIR ++  E GD+ P KKGI+LT+ QW++L   + DID R++E 
Sbjct:   15 GSESDEPTPKKAKTAAKKPAKKSADENDTSNMFSLSRQRFVNVREFRGKVLIDIREYYEPEVGDLRPGKKGISLTVDQWRKLVNQIDDIDARIEEM 110          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A443SIF6_9ACAR (Activated RNA polymerase II transcriptional coactivator p15-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SIF6_9ACAR)

HSP 1 Score: 60.1 bits (144), Expect = 6.490e-8
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 3
Query:  174 DLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDID 362
            D  +   LS N+ V V  F     +DIR ++ NE G+  P KKGI+L++P+WK+LK  + DID
Sbjct:    7 DEKNKFQLSNNRFVTVSEFRHKKRIDIREYYVNESGEKKPGKKGISLSLPEWKKLKELIHDID 69          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A1Y1YTM3_9FUNG (Putative single-stranded DNA binding protein P9 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YTM3_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 6.790e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 3
Query:  195 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
            LS  K + VR++ + VLVD R FF +  G + PTKKGI L++ QWK+LK    ++D  + + 
Sbjct:   55 LSSKKRLSVRKWKNMVLVDFREFFTDSNGVVRPTKKGITLSLDQWKKLKELANEVDDAIDQL 116          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A833VYQ0_9POAL (RNA polymerase II transcriptional coactivator KIWI-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VYQ0_9POAL)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-7
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 3
Query:   96 GEAYGPYSNASSPKTAPSEQYKPDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
            G+A G  + A  PK    +    D  D      +S NK + VR +N  V+VD R +F  +G  + PTKKGI+L++ QWK L+  + +ID  VQE+
Sbjct:   14 GDASGS-AGAPPPKRQAGDASSDDPADGIVVCEVSKNKRITVRNWNGNVMVDFREYFVKDGKQL-PTKKGISLSMDQWKILRDHIEEIDDVVQEY 106          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI0014259BD3 (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BD3)

HSP 1 Score: 60.1 bits (144), Expect = 1.410e-7
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  147 SEQYKPDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFE 383
            S+   P+ F+LS        + V VR F   VL+DIR ++   GG++ P KKGI+L++ QWK+LK  V D+D  ++E +
Sbjct:   37 SKDEDPNRFELSR------TRFVNVREFKGKVLIDIREYYE-AGGEMKPGKKGISLSVDQWKKLKEVVDDVDDSIKELQ 108          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A6J1R1E9_9HYME (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1R1E9_9HYME)

HSP 1 Score: 60.1 bits (144), Expect = 1.950e-7
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 3
Query:  159 KPDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDID 362
            KP   D  S   L  N++V VR F     VDIR  + ++ GD+ P KKGI LT+ QW++L   V ++D
Sbjct:   47 KPKTDDEDSIWDLGNNRQVNVRNFKGKYYVDIREMYYDKDGDLKPGKKGICLTMQQWRKLMDVVEEVD 114          
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A8J9ZET2_BRALA (SUB1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZET2_BRALA)

HSP 1 Score: 58.2 bits (139), Expect = 3.350e-7
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  189 MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFE 383
            + LS  + + VR F    L+DIR +++ +G ++ P +KGI+L+  QW++LKAA+ DID ++Q  E
Sbjct:   17 LQLSNKRFISVREFKGKCLIDIREYYDADG-ELKPGRKGISLSKDQWQKLKAAMEDIDEKIQAIE 80          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB71_9PHAE4.550e-1537.18PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS7_ECTSI4.170e-1246.67PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7M7G0M9_STRPU1.500e-1145.83PC4 domain-containing protein n=1 Tax=Strongylocen... [more]
UPI001BB2BB0F1.840e-1140.63activated RNA polymerase II transcriptional coacti... [more]
A0A443SIF6_9ACAR6.490e-842.86Activated RNA polymerase II transcriptional coacti... [more]
A0A1Y1YTM3_9FUNG6.790e-841.94Putative single-stranded DNA binding protein P9 n=... [more]
A0A833VYQ0_9POAL1.040e-737.89RNA polymerase II transcriptional coactivator KIWI... [more]
UPI0014259BD31.410e-739.24activated RNA polymerase II transcriptional coacti... [more]
A0A6J1R1E9_9HYME1.950e-741.18activated RNA polymerase II transcriptional coacti... [more]
A0A8J9ZET2_BRALA3.350e-740.00SUB1 protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig847contigA-nodosum_M_contig847:247721..249319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_027066-tr
Preferred nameSsb-c31a
PFAMsPC4
Model size1599
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003712,GO:0003713,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044089,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0060260,GO:0060261,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
Exons1
Evalue1.95e-14
EggNOG OGsKOG2712@1|root,KOG2712@2759|Eukaryota,3A88C@33154|Opisthokonta,3BTYI@33208|Metazoa,3DBIE@33213|Bilateria
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-19_002360.1
DescriptionTranscriptional Coactivator p15 (PC4)
Cds size216
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870220.6593285-UTR-A-nodosum_M_contig847:247720..2479081680870220.6593285-UTR-A-nodosum_M_contig847:247720..247908Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig847 247721..247908 +
1680870220.6896775-UTR-A-nodosum_M_contig847:248124..2493191680870220.6896775-UTR-A-nodosum_M_contig847:248124..249319Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig847 248125..249319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870220.6741023-CDS-A-nodosum_M_contig847:247908..2481241680870220.6741023-CDS-A-nodosum_M_contig847:247908..248124Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 247909..248124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig847.22.1prot_A-nodosum_M_contig847.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig847 247909..248124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig847.22.1

>prot_A-nodosum_M_contig847.22.1 ID=prot_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRL
KAAVRDIDVRVQEFEQRDSNV*
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mRNA from alignment at A-nodosum_M_contig847:247721..249319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig847.22.1 ID=mRNA_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1599bp|location=Sequence derived from alignment at A-nodosum_M_contig847:247721..249319+ (Ascophyllum nodosum dioecious)
CCCCCGCCCACAAGTCTGCGACCGCAAATTTGTCCTCCAACAAGGGTACG GTTGAATGGGCGGCCTTTGAGCGCGAGGCGCCACCGCTACCGGCGGGCGA AGCATACGGCCCATACAGTAACGCATCATCTCCGAAAACCGCCCCGAGCG AACAATACAAGCCAGATGTTTTCGACTTGAGCAGTCCCATGCACCTGTCC GGCAACAAGGAGGTGCGGGTAAGGCGTTTCAATGACACAGTCCTGGTCGA TATCCGCTCCTTTTTCAACAACGAAGGGGGTGACATCATACCAACCAAGA AGGGAATCGCGCTCACGATTCCGCAGTGGAAGCGCCTCAAGGCAGCTGTA CGCGATATCGACGTGAGGGTACAAGAGTTCGAACAAAGAGATAGTAACGT GTGACTTGTAGGGGAGGCCTTTACTACTGTTGAATCTGGATGCAGCCATA CTTCATGGTACAAGCAATAAGGGAGGAATGCAGAGAGAGCACCGGCGGCG ACGCTGCTGTTGGAGGAAATCGGAGGAAATCGGCAAGTCCCTTTGATGCC TGGTTGTGCGCCAACTTGTTCCTGCGCGGTACCTTTGGAAGATCAGAAAC ACGATGTATGAGTAGCCAGCCCGAGAGAACTTGGAACAAGTACAAACTCG TTGTTTCGAGTCTAGACTATTGCCTCATAATATATGAAAGAGTAAGTACG TACAAGTGTTGAGTTGTTCCTCACAAAAAACGTACCAGTACACGAGTACC AAGATACAGTAGTTTTTACAGCATACTGTAACATCTTGGGTGGGACCCCC TGGATAGCGTGGCGTCTTGACGAGTGGGGTCACGTTGTTGGGGCAGGGTC GGTATGCACTCCGTGGCTATCCACCCCATTGGGCCATTGGGTACCATGTT AGCCTTCTGATTCCATCTCGATAACTTCATGCGAGATGGAGTTCGTAATG AGCCTCTAACCTTCTACACAGCAGTAGAGTTACATTTGTAAAAACGGTGT CTTTGTAGCCTATGATCTCACCTAAACGTTTTGACATTTTTCGCCCTGAC TGGGGGATATGCTCAGAAGGTCTAGATGCGTTCAGATTTTTCTTTTAAGA ACGGTACAGTTAGTAGCTTGTCTGTCACGAGTGGAACTATTTGTAAGTAT AGCAAAAGCAATAGGCGGTAAGTTACACCTGAAATTAACCCAATTCACAC TTGATTTTGTACGTTTTTTCTTTTAAAGGCGTCGGTTTTCACAACCTTTG TGGGACTTGGTCATATTGCATCTTTTTTTTTAGCTCAAAGTAGACCTTTT TTTGCCGTGGCTTCCTTTTCCTTTTGAAGATATCATAAACGCTGGTACCA GCTGCGGTAGTTGGCGTGATGTTTTCTTGCCTGTAGGTAGGGTACAGTAC GGCTAAGAAACTTGAGCACGAGTAAAAATTCTTCACATTGCCTCTCCTTG TTTAAAGAAAAATCAGAACGCACCTAGACCTTCTGAGCATCCCCCAGTTA GGGGGGAAAAAATGTCAATACGTTTAGGTGGGATCAAAGGCTGCAAATAC AAAACCTCTTCATGGCATTTAAATGGGTTCCCCGATGGAAATAACATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig847:247721..249319+

>mRNA_A-nodosum_M_contig847.22.1 ID=mRNA_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig847:247721..249319+ (Ascophyllum nodosum dioecious)
ATGCACCTGTCCGGCAACAAGGAGGTGCGGGTAAGGCGTTTCAATGACAC
AGTCCTGGTCGATATCCGCTCCTTTTTCAACAACGAAGGGGGTGACATCA
TACCAACCAAGAAGGGAATCGCGCTCACGATTCCGCAGTGGAAGCGCCTC
AAGGCAGCTGTACGCGATATCGACGTGAGGGTACAAGAGTTCGAACAAAG
AGATAGTAACGTGTGA
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