mRNA_A-nodosum_M_contig847.22.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.550e-15 Identity = 58/156 (37.18%), Postives = 78/156 (50.00%), Query Frame = 3
Query: 3 PAHKSATANLSSNKGTVEWAAFEREAPP-------LPAGEAYGPYS------------NASSPKTAPSEQYK----PDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFEQRDSNV 401
PA++ A AN ++ A +R A P +P GEAY P S N S T S+ P FD+ S HLS ++V VR F LVDIR +F G +PTKKGIALTIPQW+RL+ A+ DID + E++ ++
Sbjct: 50 PAYQQAAANATAPTPWTPTATGDRWAQPGGPSPGTMPMGEAYKPSSSSKMYGGRSSSSNGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 205
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 4.170e-12 Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query: 177 LSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFEQRDSNV 401
+ S MHLS ++ VR F LVDIR +F G PTKKGIALTIPQW+RL+ A+ DID + E++ ++
Sbjct: 1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 75
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A7M7G0M9_STRPU (PC4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7G0M9_STRPU) HSP 1 Score: 71.6 bits (174), Expect = 1.500e-11 Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 3
Query: 165 DVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
D D S LS + V VR F VL+DIR ++ E GD++P KKGI+LT+ QW++L + V DID R++E
Sbjct: 43 DENDTSEMFSLSRQRFVNVREFRGKVLIDIREYYEKEVGDLLPGKKGISLTVDQWRKLVSQVDDIDSRIEEM 114
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI001BB2BB0F (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BB0F) HSP 1 Score: 71.2 bits (173), Expect = 1.840e-11 Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query: 108 GPYSNASSPKTAPSEQYKP-----DVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
G S+ +PK A + KP D D S+ LS + V VR F VL+DIR ++ E GD+ P KKGI+LT+ QW++L + DID R++E
Sbjct: 15 GSESDEPTPKKAKTAAKKPAKKSADENDTSNMFSLSRQRFVNVREFRGKVLIDIREYYEPEVGDLRPGKKGISLTVDQWRKLVNQIDDIDARIEEM 110
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A443SIF6_9ACAR (Activated RNA polymerase II transcriptional coactivator p15-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SIF6_9ACAR) HSP 1 Score: 60.1 bits (144), Expect = 6.490e-8 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 3
Query: 174 DLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDID 362
D + LS N+ V V F +DIR ++ NE G+ P KKGI+L++P+WK+LK + DID
Sbjct: 7 DEKNKFQLSNNRFVTVSEFRHKKRIDIREYYVNESGEKKPGKKGISLSLPEWKKLKELIHDID 69
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A1Y1YTM3_9FUNG (Putative single-stranded DNA binding protein P9 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YTM3_9FUNG) HSP 1 Score: 61.2 bits (147), Expect = 6.790e-8 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 3
Query: 195 LSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
LS K + VR++ + VLVD R FF + G + PTKKGI L++ QWK+LK ++D + +
Sbjct: 55 LSSKKRLSVRKWKNMVLVDFREFFTDSNGVVRPTKKGITLSLDQWKKLKELANEVDDAIDQL 116
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A833VYQ0_9POAL (RNA polymerase II transcriptional coactivator KIWI-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VYQ0_9POAL) HSP 1 Score: 60.5 bits (145), Expect = 1.040e-7 Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 3
Query: 96 GEAYGPYSNASSPKTAPSEQYKPDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEF 380
G+A G + A PK + D D +S NK + VR +N V+VD R +F +G + PTKKGI+L++ QWK L+ + +ID VQE+
Sbjct: 14 GDASGS-AGAPPPKRQAGDASSDDPADGIVVCEVSKNKRITVRNWNGNVMVDFREYFVKDGKQL-PTKKGISLSMDQWKILRDHIEEIDDVVQEY 106
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: UPI0014259BD3 (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BD3) HSP 1 Score: 60.1 bits (144), Expect = 1.410e-7 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3
Query: 147 SEQYKPDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFE 383
S+ P+ F+LS + V VR F VL+DIR ++ GG++ P KKGI+L++ QWK+LK V D+D ++E +
Sbjct: 37 SKDEDPNRFELSR------TRFVNVREFKGKVLIDIREYYE-AGGEMKPGKKGISLSVDQWKKLKEVVDDVDDSIKELQ 108
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A6J1R1E9_9HYME (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1R1E9_9HYME) HSP 1 Score: 60.1 bits (144), Expect = 1.950e-7 Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 3
Query: 159 KPDVFDLSSPMHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDID 362
KP D S L N++V VR F VDIR + ++ GD+ P KKGI LT+ QW++L V ++D
Sbjct: 47 KPKTDDEDSIWDLGNNRQVNVRNFKGKYYVDIREMYYDKDGDLKPGKKGICLTMQQWRKLMDVVEEVD 114
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Match: A0A8J9ZET2_BRALA (SUB1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZET2_BRALA) HSP 1 Score: 58.2 bits (139), Expect = 3.350e-7 Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 3
Query: 189 MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLKAAVRDIDVRVQEFE 383
+ LS + + VR F L+DIR +++ +G ++ P +KGI+L+ QW++LKAA+ DID ++Q E
Sbjct: 17 LQLSNKRFISVREFKGKCLIDIREYYDADG-ELKPGRKGISLSKDQWQKLKAAMEDIDEKIQAIE 80 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig847.22.1 >prot_A-nodosum_M_contig847.22.1 ID=prot_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp MHLSGNKEVRVRRFNDTVLVDIRSFFNNEGGDIIPTKKGIALTIPQWKRLback to top mRNA from alignment at A-nodosum_M_contig847:247721..249319+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig847.22.1 ID=mRNA_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1599bp|location=Sequence derived from alignment at A-nodosum_M_contig847:247721..249319+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig847:247721..249319+ >mRNA_A-nodosum_M_contig847.22.1 ID=mRNA_A-nodosum_M_contig847.22.1|Name=mRNA_A-nodosum_M_contig847.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig847:247721..249319+ (Ascophyllum nodosum dioecious)back to top |