prot_A-nodosum_M_contig8.75.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig8.75.1
Unique Nameprot_A-nodosum_M_contig8.75.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length186
Homology
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA)

HSP 1 Score: 58.2 bits (139), Expect = 1.390e-6
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   12 LHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQR--ITLIDVAYVPDLGFNLYSLHAVQR 110
            LH +    + + +++ WI +SGAS HMT D+T +++   P P   + + + D R + V  + N+ ++       R  ITL DV +VP LG NL+S   VQR
Sbjct:  313 LHVSTPDDNVAPQNETWIIDSGASRHMTGDKT-LFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 410          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-6
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   12 LHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQR--ITLIDVAYVPDLGFNLYSLHAVQR 110
            LH +    + + +++ WI +SGAS HMT D+T +++   P P   + + + D R + V  + N+ ++       R  ITL DV +VP LG NL+S   VQR
Sbjct:  312 LHVSTPDDNVAPQNETWIIDSGASRHMTGDKT-LFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 409          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A7D9I5T4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5T4_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 2.880e-6
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 0
Query:   16 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 120
            F V  G+ +  D  W+ +SGAS HMT +++ + N      G+ E + +GD R ++     N  MD++F G+  +R  L +V YVP L  NL+S+ A V +  ++        +SDASG
Sbjct:  228 FTVSEGNAKFSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGRKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASG 343          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT)

HSP 1 Score: 55.8 bits (133), Expect = 7.970e-6
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   16 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 120
            F V  G+ +  D  W+ +SGAS HMT +++ + N      G+ E + +GD R ++     N  MD++F G   +R  L +V YVP L  NL+S+ A V +  ++        +SDASG
Sbjct:   90 FTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVQAAVAKGNVVKFRGDKCWISDASG 205          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT)

HSP 1 Score: 55.8 bits (133), Expect = 8.170e-6
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   16 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 120
            F V  G+ +  D  W+ +SGAS HMT +++ + N      G+ E + +GD R ++     N  MD++F G   +R  L +V YVP L  NL+S+ A V +  ++        +SDASG
Sbjct:  254 FTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASG 369          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A6S7J908_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J908_PARCT)

HSP 1 Score: 53.5 bits (127), Expect = 4.050e-5
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   16 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA 107
            F V  G+ +  D  W+ +SGAS H+T D++ + N      G+ E + +GD   ++     N  MD++F G   +R  L +V YVP L  NL+S+ A
Sbjct:  264 FTVSEGNAKLSDCHWLIDSGASSHLTKDKSVLVNYQQF--GEPESVALGDGHVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRA 357          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0D1DPX6_USTMA1.390e-634.65Retrotransposon HobS hobase n=1 Tax=Ustilago maydi... [more]
Q2EPY7_USTMD1.430e-634.65Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2... [more]
A0A7D9I5T4_PARCT2.880e-633.90Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9F0C3_PARCT7.970e-633.90Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JQN7_PARCT8.170e-633.90Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7J908_PARCT4.050e-534.38Retrovirus-related Pol poly from transposon TNT 1-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:1178226..1178783 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.75.1mRNA_A-nodosum_M_contig8.75.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig8 1178150..1178783 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig8.75.1 ID=prot_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp
MVGDVAVPGSYLHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMS
PPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQRITLIDVAYVPDLGF
NLYSLHAVQRTQLIMSDASGTHILGANLTFPARWPRHKKRGTRGDAGEDA
WRDPCNARRIAGMCLSPWRTVDDGICGPGVNAGDS*
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