mRNA_A-nodosum_M_contig8.75.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA) HSP 1 Score: 58.5 bits (140), Expect = 1.770e-6 Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query: 110 LHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQR--ITLIDVAYVPDLGFNLYSLHAVQR 406
LH + + + +++ WI +SGAS HMT D+T +++ P P + + + D R + V + N+ ++ R ITL DV +VP LG NL+S VQR
Sbjct: 313 LHVSTPDDNVAPQNETWIIDSGASRHMTGDKT-LFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 410
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD) HSP 1 Score: 58.5 bits (140), Expect = 1.840e-6 Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query: 110 LHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQR--ITLIDVAYVPDLGFNLYSLHAVQR 406
LH + + + +++ WI +SGAS HMT D+T +++ P P + + + D R + V + N+ ++ R ITL DV +VP LG NL+S VQR
Sbjct: 312 LHVSTPDDNVAPQNETWIIDSGASRHMTGDKT-LFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 409
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A7D9I5T4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5T4_PARCT) HSP 1 Score: 57.4 bits (137), Expect = 3.530e-6 Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query: 122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 436
F V G+ + D W+ +SGAS HMT +++ + N G+ E + +GD R ++ N MD++F G+ +R L +V YVP L NL+S+ A V + ++ +SDASG
Sbjct: 228 FTVSEGNAKFSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGRKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASG 343
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT) HSP 1 Score: 56.2 bits (134), Expect = 9.860e-6 Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query: 122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 436
F V G+ + D W+ +SGAS HMT +++ + N G+ E + +GD R ++ N MD++F G +R L +V YVP L NL+S+ A V + ++ +SDASG
Sbjct: 90 FTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVQAAVAKGNVVKFRGDKCWISDASG 205
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT) HSP 1 Score: 56.2 bits (134), Expect = 1.020e-5 Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query: 122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 436
F V G+ + D W+ +SGAS HMT +++ + N G+ E + +GD R ++ N MD++F G +R L +V YVP L NL+S+ A V + ++ +SDASG
Sbjct: 254 FTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASG 369
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A8K0G8N2_9COLE (Uncharacterized protein n=2 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G8N2_9COLE) HSP 1 Score: 55.8 bits (133), Expect = 1.220e-5 Identity = 44/142 (30.99%), Postives = 66/142 (46.48%), Query Frame = 2
Query: 53 KFYVPNESMVGDVAVPGSYLHSAFVVQSGSNEDDDWIAESGASCHMTHDRT--RMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQRIT-LIDVAYVPDLGFNLYSLHA-VQRTQLIMSDASGTHILGANLTF 466
K Y N+ + +VA G L V N+D+ WIA+SGAS H++H + Y P I IG+ I + +I D +T L DV YVPD+ FNL+S+ A + + +M+D I+ N +
Sbjct: 265 KKYKKNDKINKNVAFVGLDLSEMNSVLVDFNDDETWIADSGASEHLSHQKEWFENYYEFDKPT----EIKIGNGSVINAHGKGKISLIAFDGQDYILTELNDVLYVPDIKFNLFSIGAALDKGYTMMTDNKTCKIIKQNNVY 402
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A6S7J908_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J908_PARCT) HSP 1 Score: 53.9 bits (128), Expect = 4.740e-5 Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 2
Query: 122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA 397
F V G+ + D W+ +SGAS H+T D++ + N G+ E + +GD ++ N MD++F G +R L +V YVP L NL+S+ A
Sbjct: 264 FTVSEGNAKLSDCHWLIDSGASSHLTKDKSVLVNYQQF--GEPESVALGDGHVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRA 357 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8.75.1 >prot_A-nodosum_M_contig8.75.1 ID=prot_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp MVGDVAVPGSYLHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSback to top mRNA from alignment at A-nodosum_M_contig8:1178150..1178783+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8.75.1 ID=mRNA_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at A-nodosum_M_contig8:1178150..1178783+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8:1178150..1178783+ >mRNA_A-nodosum_M_contig8.75.1 ID=mRNA_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at A-nodosum_M_contig8:1178150..1178783+ (Ascophyllum nodosum dioecious)back to top |