mRNA_A-nodosum_M_contig8.75.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8.75.1
Unique NamemRNA_A-nodosum_M_contig8.75.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-6
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  110 LHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQR--ITLIDVAYVPDLGFNLYSLHAVQR 406
            LH +    + + +++ WI +SGAS HMT D+T +++   P P   + + + D R + V  + N+ ++       R  ITL DV +VP LG NL+S   VQR
Sbjct:  313 LHVSTPDDNVAPQNETWIIDSGASRHMTGDKT-LFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 410          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD)

HSP 1 Score: 58.5 bits (140), Expect = 1.840e-6
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  110 LHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQR--ITLIDVAYVPDLGFNLYSLHAVQR 406
            LH +    + + +++ WI +SGAS HMT D+T +++   P P   + + + D R + V  + N+ ++       R  ITL DV +VP LG NL+S   VQR
Sbjct:  312 LHVSTPDDNVAPQNETWIIDSGASRHMTGDKT-LFSTYGPSPV--QEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFSTPQVQR 409          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A7D9I5T4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5T4_PARCT)

HSP 1 Score: 57.4 bits (137), Expect = 3.530e-6
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 436
            F V  G+ +  D  W+ +SGAS HMT +++ + N      G+ E + +GD R ++     N  MD++F G+  +R  L +V YVP L  NL+S+ A V +  ++        +SDASG
Sbjct:  228 FTVSEGNAKFSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGRKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASG 343          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT)

HSP 1 Score: 56.2 bits (134), Expect = 9.860e-6
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 436
            F V  G+ +  D  W+ +SGAS HMT +++ + N      G+ E + +GD R ++     N  MD++F G   +R  L +V YVP L  NL+S+ A V +  ++        +SDASG
Sbjct:   90 FTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVQAAVAKGNVVKFRGDKCWISDASG 205          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-5
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA-VQRTQLI--------MSDASG 436
            F V  G+ +  D  W+ +SGAS HMT +++ + N      G+ E + +GD R ++     N  MD++F G   +R  L +V YVP L  NL+S+ A V +  ++        +SDASG
Sbjct:  254 FTVSEGNAKLSDCHWLIDSGASSHMTKEKSVLVNYQQF--GEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASG 369          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A8K0G8N2_9COLE (Uncharacterized protein n=2 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G8N2_9COLE)

HSP 1 Score: 55.8 bits (133), Expect = 1.220e-5
Identity = 44/142 (30.99%), Postives = 66/142 (46.48%), Query Frame = 2
Query:   53 KFYVPNESMVGDVAVPGSYLHSAFVVQSGSNEDDDWIAESGASCHMTHDRT--RMYNAMSPPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQRIT-LIDVAYVPDLGFNLYSLHA-VQRTQLIMSDASGTHILGANLTF 466
            K Y  N+ +  +VA  G  L     V    N+D+ WIA+SGAS H++H +     Y     P      I IG+   I       + +I     D  +T L DV YVPD+ FNL+S+ A + +   +M+D     I+  N  +
Sbjct:  265 KKYKKNDKINKNVAFVGLDLSEMNSVLVDFNDDETWIADSGASEHLSHQKEWFENYYEFDKPT----EIKIGNGSVINAHGKGKISLIAFDGQDYILTELNDVLYVPDIKFNLFSIGAALDKGYTMMTDNKTCKIIKQNNVY 402          
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Match: A0A6S7J908_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J908_PARCT)

HSP 1 Score: 53.9 bits (128), Expect = 4.740e-5
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  122 FVVQSGSNEDDD--WIAESGASCHMTHDRTRMYNAMSPPPGDRERITIGDRRRIKVEYIRN--MDVIFHGKSDQRITLIDVAYVPDLGFNLYSLHA 397
            F V  G+ +  D  W+ +SGAS H+T D++ + N      G+ E + +GD   ++     N  MD++F G   +R  L +V YVP L  NL+S+ A
Sbjct:  264 FTVSEGNAKLSDCHWLIDSGASSHLTKDKSVLVNYQQF--GEPESVALGDGHVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRA 357          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0D1DPX6_USTMA1.770e-634.65Retrotransposon HobS hobase n=1 Tax=Ustilago maydi... [more]
Q2EPY7_USTMD1.840e-634.65Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2... [more]
A0A7D9I5T4_PARCT3.530e-633.90Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9F0C3_PARCT9.860e-633.90Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JQN7_PARCT1.020e-533.90Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8K0G8N2_9COLE1.220e-530.99Uncharacterized protein n=2 Tax=Ignelater luminosu... [more]
A0A6S7J908_PARCT4.740e-534.38Retrovirus-related Pol poly from transposon TNT 1-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8contigA-nodosum_M_contig8:1178150..1178783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5270.UM05425P0
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size634
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.04e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3V2N5@5204|Basidiomycota
DescriptionRetrotransposon gag protein
Cds size558
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870084.0923128-UTR-A-nodosum_M_contig8:1178149..11782251680870084.0923128-UTR-A-nodosum_M_contig8:1178149..1178225Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8 1178150..1178225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870084.1072416-CDS-A-nodosum_M_contig8:1178225..11787831680870084.1072416-CDS-A-nodosum_M_contig8:1178225..1178783Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8 1178226..1178783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8.75.1prot_A-nodosum_M_contig8.75.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8 1178226..1178783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8.75.1

>prot_A-nodosum_M_contig8.75.1 ID=prot_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=186bp
MVGDVAVPGSYLHSAFVVQSGSNEDDDWIAESGASCHMTHDRTRMYNAMS
PPPGDRERITIGDRRRIKVEYIRNMDVIFHGKSDQRITLIDVAYVPDLGF
NLYSLHAVQRTQLIMSDASGTHILGANLTFPARWPRHKKRGTRGDAGEDA
WRDPCNARRIAGMCLSPWRTVDDGICGPGVNAGDS*
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mRNA from alignment at A-nodosum_M_contig8:1178150..1178783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8.75.1 ID=mRNA_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at A-nodosum_M_contig8:1178150..1178783+ (Ascophyllum nodosum dioecious)
CTAGAGCTCCTTCAGCGAACAGGCCATCCTGGCGCAATTTGCGCCACCAG GCAAGTTTTATGTACCGAATGAAAGCATGGTTGGGGATGTTGCTGTACCG GGTAGTTACCTACACAGTGCGTTTGTAGTGCAGTCGGGCAGCAATGAGGA CGATGACTGGATTGCCGAAAGCGGCGCGTCGTGTCATATGACGCACGACA GGACTAGGATGTATAATGCGATGTCCCCTCCGCCCGGTGATCGCGAAAGA ATCACGATCGGGGACCGTCGGAGGATAAAAGTAGAGTATATCCGCAATAT GGATGTCATTTTCCACGGGAAGAGTGATCAGAGAATCACATTGATTGATG TCGCGTACGTCCCAGATTTAGGTTTTAACCTGTACTCGCTGCACGCCGTC CAAAGAACACAATTGATAATGTCGGACGCCTCTGGAACACACATATTAGG AGCAAATTTGACGTTCCCCGCGCGTTGGCCGCGACATAAAAAACGAGGGA CACGTGGAGATGCCGGGGAGGACGCGTGGCGAGACCCGTGTAATGCGCGA CGCATTGCAGGAATGTGCCTATCGCCATGGCGTACTGTCGACGATGGAAT ATGCGGCCCTGGTGTCAATGCTGGCGACTCGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8:1178150..1178783+

>mRNA_A-nodosum_M_contig8.75.1 ID=mRNA_A-nodosum_M_contig8.75.1|Name=mRNA_A-nodosum_M_contig8.75.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at A-nodosum_M_contig8:1178150..1178783+ (Ascophyllum nodosum dioecious)
ATGGTTGGGGATGTTGCTGTACCGGGTAGTTACCTACACAGTGCGTTTGT
AGTGCAGTCGGGCAGCAATGAGGACGATGACTGGATTGCCGAAAGCGGCG
CGTCGTGTCATATGACGCACGACAGGACTAGGATGTATAATGCGATGTCC
CCTCCGCCCGGTGATCGCGAAAGAATCACGATCGGGGACCGTCGGAGGAT
AAAAGTAGAGTATATCCGCAATATGGATGTCATTTTCCACGGGAAGAGTG
ATCAGAGAATCACATTGATTGATGTCGCGTACGTCCCAGATTTAGGTTTT
AACCTGTACTCGCTGCACGCCGTCCAAAGAACACAATTGATAATGTCGGA
CGCCTCTGGAACACACATATTAGGAGCAAATTTGACGTTCCCCGCGCGTT
GGCCGCGACATAAAAAACGAGGGACACGTGGAGATGCCGGGGAGGACGCG
TGGCGAGACCCGTGTAATGCGCGACGCATTGCAGGAATGTGCCTATCGCC
ATGGCGTACTGTCGACGATGGAATATGCGGCCCTGGTGTCAATGCTGGCG
ACTCGTGA
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