prot_A-nodosum_M_contig1209.13.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1209.13.1
Unique Nameprot_A-nodosum_M_contig1209.13.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length92
Homology
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.090e-41
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    1 MAMRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGA-GPPGA--GSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSN 89
            MAMRGVG+ TR TY AGAPSNYVAGLGRGAVGFTTRSDIGPAR PL E GA GPPGA   SS AAKDPDFGPAP GY+AGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.500e-19
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 0
Query:    6 VGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNE 91
            VG ++  TY    PSNYVAG+GRGA+GFTTRSDIGPAR P P  G    GA       DP FGPAP GY+AGRGRGMGDLA+  +E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPAR-PAPPMG----GAXXXXXXPDP-FGPAPVGYVAGRGRGMGDLARGQDE 80          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.650e-18
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 0
Query:    3 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNEG 92
            M G G Q  +TY  GAP  Y AG GRGA+GFTTRSDIGPAR+ +PE                 +FG  P GY+AGRGRGMGDLA+S  EG
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV----------------NFGQPPPGYVAGRGRGMGDLARSQAEG 74          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.400e-17
Identity = 51/95 (53.68%), Postives = 60/95 (63.16%), Query Frame = 0
Query:    3 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSS------SAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNE 91
            M GVG ++  T+   APS YVAG+GRGAVGFTTRSDIGPAR          P A +       +    P+FG AP GY+AGRGRGMG+LAKS  E
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTN---PAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 5.820e-16
Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    5 GVGRQTRETY-KAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDP--DFGPAPKGYIAGRGRGMGDLAK 87
            GVG +T  T+     PSNYVAGLGRGAVGFTTRSDIGPAR   P++GA P        A+ P  DFG A  GY+AG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAAP--------AQPPVADFGAAXXGYVAGAGRGASILGK 80          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 78.6 bits (192), Expect = 5.340e-15
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    3 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMG 83
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPARAP+   G+G P  G+      P        Y+ G GRG G
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXAPP--------YLPGAGRGRG 73          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.420e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   17 GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGA-GPPGAGSSSA--AKDPDFGPAP 71
            GAPSN+VAGLGRGAVGFT RSDIGPAR  + E GA GP GA  +S   +KDPDFGP P
Sbjct:   16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVP 73          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.240e-13
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 0
Query:    3 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSA--AKDPDFGPAPKGYIAGRGRGMG 83
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+PL   G    G    +A     P   PAP  ++ G GRG G
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGPPAP--FLPGAGRGRG 81          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.420e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    3 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAG 50
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPARAP+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48          
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    3 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAG 50
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPARAP+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE2.090e-4184.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3MCI9_9STRA2.500e-1961.63Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D6Q2_9STRA5.650e-1854.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S0XAM5_9STRA8.400e-1753.68Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S4D952_HETAK5.820e-1656.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WCC0_GLOUD5.340e-1554.32PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A6H5KUU3_9PHAE6.420e-1470.69PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5D6YDN0_9STRA2.240e-1354.22Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4Y3Q2_9STRA8.420e-1370.83Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
H3GKT1_PHYRM1.060e-1270.83PRP1_N domain-containing protein n=24 Tax=Peronosp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010491PRP1 splicing factor, N-terminalPFAMPF06424PRP1_Ncoord: 18..50
e-value: 1.1E-12
score: 48.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1209contigA-nodosum_M_contig1209:144826..146488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1209.13.1mRNA_A-nodosum_M_contig1209.13.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1209 144786..146488 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1209.13.1 ID=prot_A-nodosum_M_contig1209.13.1|Name=mRNA_A-nodosum_M_contig1209.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MAMRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAG
AGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010491PRP1_N