mRNA_A-nodosum_M_contig1209.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1209.13.1
Unique NamemRNA_A-nodosum_M_contig1209.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.490e-41
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 2 
Query:   41 MAMRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGA-GPPGA--GSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSN 307
            MAMRGVG+ TR TY AGAPSNYVAGLGRGAVGFTTRSDIGPAR PL E GA GPPGA   SS AAKDPDFGPAP GY+AGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.040e-19
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 2 
Query:   56 VGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNE 313
            VG ++  TY    PSNYVAG+GRGA+GFTTRSDIGPAR P P  G    GA       DP FGPAP GY+AGRGRGMGDLA+  +E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPAR-PAPPMG----GAXXXXXXPDP-FGPAPVGYVAGRGRGMGDLARGQDE 80
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.870e-18
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 2 
Query:   47 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNEG 316
            M G G Q  +TY  GAP  Y AG GRGA+GFTTRSDIGPAR+ +PE                 +FG  P GY+AGRGRGMGDLA+S  EG
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV----------------NFGQPPPGYVAGRGRGMGDLARSQAEG 74
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.920e-17
Identity = 51/95 (53.68%), Postives = 60/95 (63.16%), Query Frame = 2 
Query:   47 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSS------SAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNE 313
            M GVG ++  T+   APS YVAG+GRGAVGFTTRSDIGPAR          P A +       +    P+FG AP GY+AGRGRGMG+LAKS  E
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTN---PAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 4.750e-16
Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 2 
Query:   53 GVGRQTRETY-KAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDP--DFGPAPKGYIAGRGRGMGDLAK 301
            GVG +T  T+     PSNYVAGLGRGAVGFTTRSDIGPAR   P++GA P        A+ P  DFG A  GY+AG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAAP--------AQPPVADFGAAXXGYVAGAGRGASILGK 80
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 79.0 bits (193), Expect = 6.450e-15
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 2 
Query:   47 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMG 289
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPARAP+   G+G P  G+      P        Y+ G GRG G
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXAPP--------YLPGAGRGRG 73
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.020e-13
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:   89 GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGA-GPPGAGSSSA--AKDPDFGPAP 253
            GAPSN+VAGLGRGAVGFT RSDIGPAR  + E GA GP GA  +S   +KDPDFGP P
Sbjct:   16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVP 73
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.700e-13
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:   47 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAGAGPPGAGSSSA--AKDPDFGPAPKGYIAGRGRGMG 289
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+PL   G    G    +A     P   PAP  ++ G GRG G
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGPPAP--FLPGAGRGRG 81
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BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.840e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2 
Query:   47 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAG 190
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPARAP+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48
[Close]
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM)

HSP 1 Score: 72.4 bits (176), Expect = 1.280e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2 
Query:   47 MRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAG 190
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPARAP+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1209.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE2.490e-4184.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3MCI9_9STRA3.040e-1961.63Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D6Q2_9STRA6.870e-1854.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S0XAM5_9STRA9.920e-1753.68Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S4D952_HETAK4.750e-1656.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WCC0_GLOUD6.450e-1554.32PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A6H5KUU3_9PHAE1.020e-1370.69PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5D6YDN0_9STRA2.700e-1354.22Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4Y3Q2_9STRA9.840e-1370.83Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
H3GKT1_PHYRM1.280e-1270.83PRP1_N domain-containing protein n=24 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1209contigA-nodosum_M_contig1209:144786..146488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T002611
PFAMsPRP1_N
Model size316
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.75e-16
EggNOG OGsKOG0495@1|root,KOG0495@2759|Eukaryota,1MA7B@121069|Pythiales
Descriptionfactor. Source PGD
Cds size276
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866635.4365106-UTR-A-nodosum_M_contig1209:144785..1448251680866635.4365106-UTR-A-nodosum_M_contig1209:144785..144825Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1209 144786..144825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866635.447747-CDS-A-nodosum_M_contig1209:144825..1448741680866635.447747-CDS-A-nodosum_M_contig1209:144825..144874Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1209 144826..144874 +
1680866635.4558072-CDS-A-nodosum_M_contig1209:146261..1464881680866635.4558072-CDS-A-nodosum_M_contig1209:146261..146488Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1209 146262..146488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1209.13.1prot_A-nodosum_M_contig1209.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1209 144826..146488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1209.13.1

>prot_A-nodosum_M_contig1209.13.1 ID=prot_A-nodosum_M_contig1209.13.1|Name=mRNA_A-nodosum_M_contig1209.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MAMRGVGRQTRETYKAGAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEAG
AGPPGAGSSSAAKDPDFGPAPKGYIAGRGRGMGDLAKSNNEG
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mRNA from alignment at A-nodosum_M_contig1209:144786..146488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1209.13.1 ID=mRNA_A-nodosum_M_contig1209.13.1|Name=mRNA_A-nodosum_M_contig1209.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1703bp|location=Sequence derived from alignment at A-nodosum_M_contig1209:144786..146488+ (Ascophyllum nodosum dioecious)
AAAGCCCACTCCTGAAGATCTAAGAAGAGCGATTTGAAGGATGGCGATGC
GTGGAGTTGGAAGGCAGACCCGTGAAACCTACAAGGCCGGTGAGAATGAA
GATGATCCTCAGGCCTGCTTTACGCAGCAAGTCTCGTAACCATTACGAAG
TATTTAATAAGTAATTAGTGCTACCGGTAGCCTCTTTCCTCTCAACCTGC
ATGGTTCAACAACCAGCGCATAAAGTAGTCATCTTATACAGAACAGTAGT
ATATCCGGTATAATAGAGAGAGTAATCTGCTCGAAGGTACAAAAGTACTT
CGTCAGGGAGGTATATTTATTGAAGGCGATTCGAGTACCATAGCTTTGCC
CCCAACAGTACTCTTGCATTCAGTTTCAATGAGCTCTTGCAGATAACTCC
ACTGGCTGTTGCAATAGCGCTACAACTACTGTGTTGTACTTCTTGTTCTA
GTTGTCGGCGCCTTTTGTGGCACGCGGTCGTTCGCGCCGCGGCGCGCTAC
GGCACTTATAACTTGCGCTGTAGCTCTAGCCCCGTGGTTGTCGTTGGTGC
GAGCATAAAGTACGTGCGTCGCCGAATCGATGCTTGAAACCATAGTTGAC
CTGCTCTGAACAACACTCCGATCTCCCCCAAACAATGCAAGTGGCGCACA
CGGTCGGAATACTTGTACAAGTACCAGGGATCTGTCGTCTAGATGTATCT
TGGACTGAGATTAGCATCGTCTCGCGCTGTTTTCTCTCTCCGCGGTTGAC
GAATGATGACTGCTGTGGTATCTAAAAGAGCTATGCGCCGCATGTATAGT
AATCGCATACAAGGTATAGCAGAGTAAGGATCAACCGGGTAAGATTGCCA
ACCCTGCTCGTGGTCAGCGGAACAGGTAAAATGAACATTTCCCTGTCCCC
GTTCGCGCCTGAGAATTCAGCCTCGCGAGACGGGTTCGACCGTCCCTTCC
CGCGTCAGCCTGCTCATTCCCCATACTCAGGCTGAATCTGGTGCTTACTC
ACGGGATTCCTCCCGATTTCCGCGGCGGCGTCTATTTTCTTTTTTTTATC
GCCATACGCCCTCGGGTCAGTGCCGAGTTTATCGGGTCGCGTAATTGCGT
ACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAGTCCT
CAAGGTAGTTCCAGTAACGGGTGCTGCCTTTCCCATCACCACTGACCAAT
CAATGTGCGCCTCTCTTTTTCCACACCCACTATACTATTATTGATATGAC
ATGAGCAGCTCCAGCTAACTCTTCTGAAATATACCAAAAACGGGGCGTGG
ACTGCAGATGAATCGCTTGGCCCGTATCTCCCCGTTCTCGCCCTTCTCCC
CGTCCTACCCCTTGTTCTACACCGTGCTGTATTCATGTACCCTTTTTACG
TACGATACGCTTGGTCGTTTACCTCACGCACGATCGCCAAATAAACCGGC
ATATCATCTACCCCCTTCCTCCCCAGGTGCACCCTCAAACTATGTCGCCG
GTCTTGGCCGCGGTGCCGTGGGCTTCACCACCCGATCCGATATCGGCCCT
GCCCGCGCCCCTCTCCCCGAGGCCGGCGCCGGCCCGCCCGGCGCCGGATC
TTCCAGCGCCGCGAAAGATCCCGACTTCGGCCCGGCGCCGAAGGGATACA
TTGCCGGGCGGGGGCGTGGCATGGGTGACCTCGCAAAGTCTAACAACGAA
GGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1209:144786..146488+

>mRNA_A-nodosum_M_contig1209.13.1 ID=mRNA_A-nodosum_M_contig1209.13.1|Name=mRNA_A-nodosum_M_contig1209.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig1209:144786..146488+ (Ascophyllum nodosum dioecious)
ATGGCGATGCGTGGAGTTGGAAGGCAGACCCGTGAAACCTACAAGGCCGG
TGCACCCTCAAACTATGTCGCCGGTCTTGGCCGCGGTGCCGTGGGCTTCA
CCACCCGATCCGATATCGGCCCTGCCCGCGCCCCTCTCCCCGAGGCCGGC
GCCGGCCCGCCCGGCGCCGGATCTTCCAGCGCCGCGAAAGATCCCGACTT
CGGCCCGGCGCCGAAGGGATACATTGCCGGGCGGGGGCGTGGCATGGGTG
ACCTCGCAAAGTCTAACAACGAAGGC
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