prot_A-nodosum_M_contig1207.9.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1207.9.1
Unique Nameprot_A-nodosum_M_contig1207.9.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length116
Homology
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2R6QI23_ACTCC (Endonuclease (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QI23_ACTCC)

HSP 1 Score: 112 bits (279), Expect = 1.450e-26
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+++G + V+K K   DG VE+YK R VAKGF Q  GI Y+E+ +P    +S+R  LAV A   W   Q+DV+ AFL  D+TEE+Y++LP G   S NQV RL++A+YG
Sbjct:  347 LVDLPPGKSIIGCRWVYKIKTRADGTVERYKARLVAKGFTQEYGIDYEETFAPVARLTSVRSLLAVAATRGWSLCQMDVKNAFLNGDLTEEVYMQLPPGSSSSSNQVCRLRRALYG 462          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A4S4N6A1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N6A1_9APHY)

HSP 1 Score: 111 bits (277), Expect = 4.420e-26
Identity = 55/115 (47.83%), Postives = 81/115 (70.43%), Query Frame = 0
Query:    2 VDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            VDRP+ + V+ +K VFK K+G DG++EKYK R VAKGF Q++G+ Y ++ +P    SSIR  LA+   LD E  Q+DV+ AFL  D+ EE+++E+P G++D  +QV  L K++YG
Sbjct:  313 VDRPRNRKVIDSKWVFKYKLGPDGQIEKYKARLVAKGFTQVEGLDYNDTFAPVSKFSSIRTLLALADKLDLEVHQMDVKSAFLNGDLEEEIFMEMPPGFKDD-SQVWSLHKSIYG 426          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9HQC4_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQC4_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 1.350e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:   16 LVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 131          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9IA49_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IA49_FAGSY)

HSP 1 Score: 109 bits (273), Expect = 1.590e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct: 1046 LVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPFFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 1161          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9J915_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J915_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.120e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  492 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 607          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9J285_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J285_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  529 LVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 644          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9H2Q3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H2Q3_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  559 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 674          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9HN51_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HN51_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  688 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 803          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9HUH0_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HUH0_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  554 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 669          
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9JA21_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9JA21_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 116
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  688 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 803          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6QI23_ACTCC1.450e-2649.14Endonuclease (Fragment) n=1 Tax=Actinidia chinensi... [more]
A0A4S4N6A1_9APHY4.420e-2647.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HQC4_FAGSY1.350e-2545.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IA49_FAGSY1.590e-2545.69Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9J915_FAGSY2.120e-2545.69Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9J285_FAGSY2.130e-2545.69Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9H2Q3_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HN51_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HUH0_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9JA21_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..116
e-value: 1.5E-28
score: 100.0
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 15..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1207contigA-nodosum_M_contig1207:153005..153352 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1207.9.1mRNA_A-nodosum_M_contig1207.9.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1207 153005..153352 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1207.9.1 ID=prot_A-nodosum_M_contig1207.9.1|Name=mRNA_A-nodosum_M_contig1207.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQES
SSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGY
RDSPNQVGRLQKAMYG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2