mRNA_A-nodosum_M_contig1207.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1207.9.1
Unique NamemRNA_A-nodosum_M_contig1207.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2R6QI23_ACTCC (Endonuclease (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QI23_ACTCC)

HSP 1 Score: 112 bits (279), Expect = 1.450e-26
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+++G + V+K K   DG VE+YK R VAKGF Q  GI Y+E+ +P    +S+R  LAV A   W   Q+DV+ AFL  D+TEE+Y++LP G   S NQV RL++A+YG
Sbjct:  347 LVDLPPGKSIIGCRWVYKIKTRADGTVERYKARLVAKGFTQEYGIDYEETFAPVARLTSVRSLLAVAATRGWSLCQMDVKNAFLNGDLTEEVYMQLPPGSSSSSNQVCRLRRALYG 462
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A4S4N6A1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N6A1_9APHY)

HSP 1 Score: 111 bits (277), Expect = 4.420e-26
Identity = 55/115 (47.83%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    4 VDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            VDRP+ + V+ +K VFK K+G DG++EKYK R VAKGF Q++G+ Y ++ +P    SSIR  LA+   LD E  Q+DV+ AFL  D+ EE+++E+P G++D  +QV  L K++YG
Sbjct:  313 VDRPRNRKVIDSKWVFKYKLGPDGQIEKYKARLVAKGFTQVEGLDYNDTFAPVSKFSSIRTLLALADKLDLEVHQMDVKSAFLNGDLEEEIFMEMPPGFKDD-SQVWSLHKSIYG 426
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9HQC4_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HQC4_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 1.350e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:   16 LVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 131
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9IA49_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IA49_FAGSY)

HSP 1 Score: 109 bits (273), Expect = 1.590e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct: 1046 LVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPFFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 1161
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9J915_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J915_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.120e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  492 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 607
[Close]
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9J285_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J285_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  529 LVDLPHGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 644
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9H2Q3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H2Q3_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  559 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 674
[Close]
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9HN51_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HN51_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  688 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 803
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BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9HUH0_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HUH0_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  554 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 669
[Close]
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Match: A0A2N9JA21_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9JA21_FAGSY)

HSP 1 Score: 109 bits (272), Expect = 2.130e-25
Identity = 53/116 (45.69%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    1 VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYG 348
            +VD P GK+ +G K V+K K   DG +E+YK R VAKG+ Q  GI Y+E+ +P    +S+R  LA+ A+  W   Q+DV+ AFL  D+TEE+Y++ P GY D P++V  L++A+YG
Sbjct:  688 LVDLPPGKSAIGCKWVYKIKTKSDGSIERYKARLVAKGYAQEYGIDYEETFAPVARITSVRSLLAIAAVHQWPLFQMDVKNAFLNGDLTEEVYMQAPPGYSDCPDKVCLLRRALYG 803
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1207.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R6QI23_ACTCC1.450e-2649.14Endonuclease (Fragment) n=1 Tax=Actinidia chinensi... [more]
A0A4S4N6A1_9APHY4.420e-2647.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HQC4_FAGSY1.350e-2545.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IA49_FAGSY1.590e-2545.69Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9J915_FAGSY2.120e-2545.69Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9J285_FAGSY2.130e-2545.69Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9H2Q3_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HN51_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HUH0_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9JA21_FAGSY2.130e-2545.69Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1207contigA-nodosum_M_contig1207:153005..153352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog981085.XP_010101443.1
PFAMsArm,CH,IQ
Model size348
Max annot lvl35493|Streptophyta
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.86e-25
EggNOG OGsCOG2801@1|root,KOG0165@1|root,KOG0017@2759|Eukaryota,KOG0165@2759|Eukaryota,37R7M@33090|Viridiplantae,3GGW1@35493|Streptophyta,4JJ08@91835|fabids
DescriptionAbnormal spindle-like microcephaly-associated protein homolog
Cds size348
COG categoryZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866631.227729-CDS-A-nodosum_M_contig1207:153004..1533521680866631.227729-CDS-A-nodosum_M_contig1207:153004..153352Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1207 153005..153352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1207.9.1prot_A-nodosum_M_contig1207.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1207 153005..153352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1207.9.1

>prot_A-nodosum_M_contig1207.9.1 ID=prot_A-nodosum_M_contig1207.9.1|Name=mRNA_A-nodosum_M_contig1207.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
VVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQES
SSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGY
RDSPNQVGRLQKAMYG
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mRNA from alignment at A-nodosum_M_contig1207:153005..153352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1207.9.1 ID=mRNA_A-nodosum_M_contig1207.9.1|Name=mRNA_A-nodosum_M_contig1207.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig1207:153005..153352- (Ascophyllum nodosum dioecious)
GTCGTTGATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTT
TAAACGGAAGGTCGGCCAGGATGGCCGTGTAGAAAAGTACAAATGCCGCT
TCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAGAGTCA
TCGTCGCCGACACCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGAT
GGCCCTGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATGGCGTTTC
TCGAGGCGGATGTTACGGAGGAGCTCTACGTTGAGCTCCCCGACGGGTAT
CGTGACTCGCCGAACCAGGTTGGACGACTGCAGAAGGCCATGTACGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1207:153005..153352-

>mRNA_A-nodosum_M_contig1207.9.1 ID=mRNA_A-nodosum_M_contig1207.9.1|Name=mRNA_A-nodosum_M_contig1207.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig1207:153005..153352- (Ascophyllum nodosum dioecious)
GTCGTTGATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTT
TAAACGGAAGGTCGGCCAGGATGGCCGTGTAGAAAAGTACAAATGCCGCT
TCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAGAGTCA
TCGTCGCCGACACCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGAT
GGCCCTGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATGGCGTTTC
TCGAGGCGGATGTTACGGAGGAGCTCTACGTTGAGCTCCCCGACGGGTAT
CGTGACTCGCCGAACCAGGTTGGACGACTGCAGAAGGCCATGTACGGC
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