prot_A-nodosum_M_contig1124.13.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1124.13.1
Unique Nameprot_A-nodosum_M_contig1124.13.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length113
Homology
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.570e-62
Identity = 91/111 (81.98%), Postives = 102/111 (91.89%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEES 111
            MAVNEHRPT A+ KF +KEG + SSATFIFGDEDHTLGNALRHVLMQN++VDFCGYSVPHPSEPKMN+RLQTTGRPALE+LKEGLRDLR LC+ILEERV+  +PD E+EES
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDAEDEES 111          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.050e-46
Identity = 73/107 (68.22%), Postives = 91/107 (85.05%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTT-GRPALEVLKEGLRDLRSLCDILEERVDEALPDP 106
            M+VNEHRP  A+ KF++ EG T +SATF+FGDEDHTLGNALRHVLMQ  + DFCGYSVPHPSEPKMN+RLQT  G PA++VLK GL+DL ++CDIL+E++D A+ +P
Sbjct:    1 MSVNEHRPKPADLKFEILEGATTTSATFVFGDEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD-AMGEP 106          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 142 bits (357), Expect = 2.010e-41
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDIL 95
            MAVNEHR   AE +F + EG T  SATF+FG+EDHTLGNALRHVLMQ ++ DFCGYSVPHP+EPKMN+RLQT G  AL VL+ GL DL  +CD+L
Sbjct:   28 MAVNEHRTMPAEERFAVLEGSTSHSATFVFGNEDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 140 bits (352), Expect = 9.340e-41
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTG-RPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEES 111
            M+VNEHRP  AE KF+  E   E S TF+FGDEDHTLGN+LRHVLM  ++  FCGYSVPHPSEPKMN+RLQT+  +PAL+VLK+GL ++  +CD+ +  +D A+ D +E+++
Sbjct:    1 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYDEQQA 112          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: W7TJI2_9STRA (Dna-directed rna polymerases i and iii subunit rpac2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.760e-41
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTG-RPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEES 111
            M+VNEHRP  AE KF+  E   E S TF+FGDEDHTLGN+LRHVLM  ++  FCGYSVPHPSEPKMN+RLQT+  +PAL+VLK+GL ++  +CD+ +  +D A+ D EE+++
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S2UY40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY40_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.180e-37
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTT-GRPALEVLKEGLRDLRSLCDILEERVDEALPD 105
            MAVNEH+   A+ +F   +G T  S TF FGDEDHTLGNALRHVLMQ    + CGYSVPHP+EP M++RLQT  G  A EVLK+GL DL  +CD L ++ D+AL D
Sbjct:    1 MAVNEHKTLPADIRFQKLQGSTIDSCTFSFGDEDHTLGNALRHVLMQQAKTELCGYSVPHPTEPYMHVRLQTIQGSDATEVLKDGLNDLAKICDTLTDKFDKALND 106          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 9.700e-37
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSA---TFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGR--PALEVLKEGLRDLRSLCDILEERVDEAL 103
            MAVNE R   A+  F++ E   E+     TF+FGDE HTLGNALRHVLM+ ++  FCGYS+PHPSEPKMNMRLQTT +  PA+++LK GL+DL  +CD+++E   +AL
Sbjct:    1 MAVNEQRLATADVAFEVLEAADETDVGNRTFVFGDEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDEAFTDAL 108          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.940e-36
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTES---SATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRP--ALEVLKEGLRDLRSLCDILEERVDEAL 103
            M+VNEHR    E  F +     +    + TFIFG+EDHTLGNALRHVLMQ R+  FCGYS+PHPSEPKMN+RLQT  +   A+++LK GL+DL  +CD+++E  D+AL
Sbjct:    1 MSVNEHRTPQEEVDFQILNSPDDKDPGNRTFIFGNEDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDETFDDAL 108          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S2WKX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.340e-33
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTT-GRPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEE 110
            MAVNE     AE +  +K G +E  ATFI GD+DHTLGNALRHVLMQ R  +FCGYS+PHPSEP +++RLQT  G  A E LK GL++L   CD +E   D A  D E+++
Sbjct:    1 MAVNEVTAKTAEHRLQVKLGESEDCATFILGDQDHTLGNALRHVLMQTRGTEFCGYSIPHPSEPYVHLRLQTQDGTSAAEKLKAGLKELSVSCDHIEAAFDRAFDDFEKKQ 111          
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: F0YN30_AURAN (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN30_AURAN)

HSP 1 Score: 115 bits (289), Expect = 9.080e-32
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0
Query:   27 TFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDIL 95
            TF+F DEDHTLGNALRHVLM+ RD DF GYSVPHPSEP MN+RLQTTGRPAL V+ +GL  L S+CD L
Sbjct:    1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLAQLSSICDSL 69          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI1.570e-6281.98RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA1.050e-4668.22RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
A0A7S4DHT9_HETAK2.010e-4168.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D350_9STRA9.340e-4158.04RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]
W7TJI2_9STRA9.760e-4158.93Dna-directed rna polymerases i and iii subunit rpa... [more]
A0A7S2UY40_9STRA2.180e-3759.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1D2_9STRA9.700e-3756.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TTH9_9STRA7.940e-3655.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WKX3_9STRA4.340e-3354.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YN30_AURAN9.080e-3275.36RNA_pol_L_2 domain-containing protein (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 19..105
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 19..105
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 3..111
e-value: 8.1E-34
score: 117.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 20..103
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 26..98
e-value: 4.4E-31
score: 106.5
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 30..61
IPR033898DNA-directed RNA polymerases I and III subunit AC19CDDcd07029RNAP_I_III_AC19coord: 17..97
e-value: 1.58825E-43
score: 135.052

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1124contigA-nodosum_M_contig1124:127004..128928 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1124.13.1mRNA_A-nodosum_M_contig1124.13.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1124 126272..128928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1124.13.1 ID=prot_A-nodosum_M_contig1124.13.1|Name=mRNA_A-nodosum_M_contig1124.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRD
VDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDILEERVD
EALPDPEEEESY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR033898RNAP_AC19