mRNA_A-nodosum_M_contig1124.13.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI) HSP 1 Score: 196 bits (497), Expect = 2.870e-59 Identity = 91/111 (81.98%), Postives = 102/111 (91.89%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEES 333
MAVNEHRPT A+ KF +KEG + SSATFIFGDEDHTLGNALRHVLMQN++VDFCGYSVPHPSEPKMN+RLQTTGRPALE+LKEGLRDLR LC+ILEERV+ +PD E+EES
Sbjct: 1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDAEDEES 111
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.470e-43 Identity = 73/109 (66.97%), Postives = 92/109 (84.40%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTT-GRPALEVLKEGLRDLRSLCDILEERVDEALPDPEE 324
M+VNEHRP A+ KF++ EG T +SATF+FGDEDHTLGNALRHVLMQ + DFCGYSVPHPSEPKMN+RLQT G PA++VLK GL+DL ++CDIL+E++D A+ +P +
Sbjct: 1 MSVNEHRPKPADLKFEILEGATTTSATFVFGDEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD-AMGEPSD 108
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK) HSP 1 Score: 142 bits (357), Expect = 4.230e-38 Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDIL 285
MAVNEHR AE +F + EG T SATF+FG+EDHTLGNALRHVLMQ ++ DFCGYSVPHP+EPKMN+RLQT G AL VL+ GL DL +CD+L
Sbjct: 28 MAVNEHRTMPAEERFAVLEGSTSHSATFVFGNEDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA) HSP 1 Score: 141 bits (355), Expect = 6.760e-38 Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTG-RPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEES 333
M+VNEHRP AE KF+ E E S TF+FGDEDHTLGN+LRHVLM ++ FCGYSVPHPSEPKMN+RLQT+ +PAL+VLK+GL ++ +CD+ + +D A+ D +E+++
Sbjct: 1 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYDEQQA 112
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: W7TJI2_9STRA (Dna-directed rna polymerases i and iii subunit rpac2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI2_9STRA) HSP 1 Score: 142 bits (358), Expect = 7.280e-38 Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTG-RPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEES 333
M+VNEHRP AE KF+ E E S TF+FGDEDHTLGN+LRHVLM ++ FCGYSVPHPSEPKMN+RLQT+ +PAL+VLK+GL ++ +CD+ + +D A+ D EE+++
Sbjct: 37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQA 148
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S2UY40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY40_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.500e-34 Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTT-GRPALEVLKEGLRDLRSLCDILEERVDEALPDPE 321
MAVNEH+ A+ +F +G T S TF FGDEDHTLGNALRHVLMQ + CGYSVPHP+EP M++RLQT G A EVLK+GL DL +CD L ++ D+AL D E
Sbjct: 1 MAVNEHKTLPADIRFQKLQGSTIDSCTFSFGDEDHTLGNALRHVLMQQAKTELCGYSVPHPTEPYMHVRLQTIQGSDATEVLKDGLNDLAKICDTLTDKFDKALNDFE 108
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.100e-33 Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSA---TFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGR--PALEVLKEGLRDLRSLCDILEERVDEAL 309
MAVNE R A+ F++ E E+ TF+FGDE HTLGNALRHVLM+ ++ FCGYS+PHPSEPKMNMRLQTT + PA+++LK GL+DL +CD+++E +AL
Sbjct: 1 MAVNEQRLATADVAFEVLEAADETDVGNRTFVFGDEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDEAFTDAL 108
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.610e-32 Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTES---SATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRP--ALEVLKEGLRDLRSLCDILEERVDEAL 309
M+VNEHR E F + + + TFIFG+EDHTLGNALRHVLMQ R+ FCGYS+PHPSEPKMN+RLQT + A+++LK GL+DL +CD+++E D+AL
Sbjct: 1 MSVNEHRTPQEEVDFQILNSPDDKDPGNRTFIFGNEDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDETFDDAL 108
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: A0A7S2WKX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX3_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.580e-30 Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 1 MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTT-GRPALEVLKEGLRDLRSLCDILEERVDEALPDPEEEE 330
MAVNE AE + +K G +E ATFI GD+DHTLGNALRHVLMQ R +FCGYS+PHPSEP +++RLQT G A E LK GL++L CD +E D A D E+++
Sbjct: 1 MAVNEVTAKTAEHRLQVKLGESEDCATFILGDQDHTLGNALRHVLMQTRGTEFCGYSIPHPSEPYVHLRLQTQDGTSAAEKLKAGLKELSVSCDHIEAAFDRAFDDFEKKQ 111
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Match: F0YN30_AURAN (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN30_AURAN) HSP 1 Score: 115 bits (289), Expect = 9.080e-29 Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 79 TFIFGDEDHTLGNALRHVLMQNRDVDFCGYSVPHPSEPKMNMRLQTTGRPALEVLKEGLRDLRSLCDIL 285
TF+F DEDHTLGNALRHVLM+ RD DF GYSVPHPSEP MN+RLQTTGRPAL V+ +GL L S+CD L
Sbjct: 1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLAQLSSICDSL 69 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1124.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1124.13.1 >prot_A-nodosum_M_contig1124.13.1 ID=prot_A-nodosum_M_contig1124.13.1|Name=mRNA_A-nodosum_M_contig1124.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp MAVNEHRPTAAEFKFDMKEGGTESSATFIFGDEDHTLGNALRHVLMQNRDback to top mRNA from alignment at A-nodosum_M_contig1124:126272..128928- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1124.13.1 ID=mRNA_A-nodosum_M_contig1124.13.1|Name=mRNA_A-nodosum_M_contig1124.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2657bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:126272..128928- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1124:126272..128928- >mRNA_A-nodosum_M_contig1124.13.1 ID=mRNA_A-nodosum_M_contig1124.13.1|Name=mRNA_A-nodosum_M_contig1124.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig1124:126272..128928- (Ascophyllum nodosum dioecious)back to top |