prot_A-nodosum_M_contig1113.8.3 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1113.8.3
Unique Nameprot_A-nodosum_M_contig1113.8.3
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length260
Homology
BLAST of mRNA_A-nodosum_M_contig1113.8.3 vs. uniprot
Match: A0A6H5JJF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.670e-29
Identity = 94/231 (40.69%), Postives = 134/231 (58.01%), Query Frame = 0
Query:    1 MAMDKNVLQGFVEERWEEVKRASSILSDALL--------SDSDDDSRKASSAAKPSAATATTKAGDVATGAGGVG-DKDQEAVLGSLSSPRD--------------------LMSQRARDALDDFLKDPDVEQLLGRARGFAKGRLVQAEAAARILKGEDEAVGAQSARGDRTDAEGAARSGPESSSDTPILSGLASDAREFVKERVAQARDGAREVADAVAEVRASHPSA 202
            MAMDK+++Q F+ ER  EVK A+S+++DA+L        S S ++  ++SSA +  +A A     + A     VG  +++   + S ++  D                     +S RAR A+DD L+DPDVE+L GRA+GFA+ RL++AE AARI+ GE+E       RG+R   EG    G  S ++TPI+SGLASDAREFV  RV QARDGA+EV +A  + R    +A
Sbjct:  166 MAMDKSMIQSFLSERAGEVKHATSVIADAILEKDGDAGGSSSREEGEQSSSAMR--SAPAPPSHNNAAPCVSSVGRPQERPGTVSSTTAASDAESHPNNDPGHADLDGGATRFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAEEAARIITGEEEE------RGERKRPEGVGEGG--SDTETPIISGLASDAREFVAARVGQARDGAKEVVEAAMDARTQRRAA 386          
BLAST of mRNA_A-nodosum_M_contig1113.8.3 vs. uniprot
Match: D8LCT5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.120e-10
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 0
Query:    1 MAMDKNVLQGFVEERWEEVKRASSILSDALL--------SDSDDDSRKASSA-----AKPSAATATTKAGDVATGAGGVGDKDQEAVLGSLSSPRD--------------------LMSQRARDALDDFLKDPDVEQLLGRARGFAKGRLVQAE 121
            MAMDK++LQ F+ ER  EVK A+S+++DA+L        S S ++  ++S A     A PS   A   A  VA        ++Q   + S ++  D                     +S RAR A+DD L+DPDVE+L GRA+GFA+ RL++AE
Sbjct:  145 MAMDKSMLQSFLSERAGEVKHATSLIADAILEKDGGAGGSSSREEGGRSSPALRSAPAPPSINNAAPDASSVAR------PREQPGTVSSTTAASDAESHPSNDPGHADLDGGATRFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAE 292          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1113.8.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJF4_9PHAE6.670e-2940.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCT5_ECTSI2.120e-1036.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1113contigA-nodosum_M_contig1113:175787..176566 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1113.8.3mRNA_A-nodosum_M_contig1113.8.3Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1113 172103..177131 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1113.8.3 ID=prot_A-nodosum_M_contig1113.8.3|Name=mRNA_A-nodosum_M_contig1113.8.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=260bp
MAMDKNVLQGFVEERWEEVKRASSILSDALLSDSDDDSRKASSAAKPSAA
TATTKAGDVATGAGGVGDKDQEAVLGSLSSPRDLMSQRARDALDDFLKDP
DVEQLLGRARGFAKGRLVQAEAAARILKGEDEAVGAQSARGDRTDAEGAA
RSGPESSSDTPILSGLASDAREFVKERVAQARDGAREVADAVAEVRASHP
SAPGEAGDDGVDGGDDSRKLKAEERTGGRGGEEKANGKGGDGDVVEDRGN
RRKGGDGEK*
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