mRNA_A-nodosum_M_contig1113.8.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1113.8.3
Unique NamemRNA_A-nodosum_M_contig1113.8.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1113.8.3 vs. uniprot
Match: A0A6H5JJF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF4_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 1.080e-82
Identity = 173/352 (49.15%), Postives = 232/352 (65.91%), Query Frame = 1 
Query:    1 RKLPLSVHLKVWSSTFKSYGQSFEETFNWDRRRQEQTIKDNAAKSVEALKEIAKDVREATHNTPEDLEKSKKALRELLAEIHENRDGLKSAAQEKLDLIRFSLSEFSAGYREARDQELKRIMAMDKNVLQGFVEERWEEVKRASSILSDALL--------SDSDDDSRKASSAAKPSAATATTKAGDVATGAGGVG-DKDQEAVLGSLSSPRD--------------------LMSQRARDALDDFLKDPDVEQLLGRARGFAKGRLVQAEAAARILKGEDEAVGAQSARGDRTDAEGAARSGPESSSDTPILSGLASDAREFVKERVAQARDGAREVADAVAEVRASHPSA 969
            RKLPLSVH ++WSST+K Y  SF E+F W R+R+E+  K  A + +  L+ + K+ RE THN+PEDLEKSK+AL+EL+ EIHENRD LKSAAQEKLDLIR SLSEFS GYREARD+E+KR+MAMDK+++Q F+ ER  EVK A+S+++DA+L        S S ++  ++SSA +  +A A     + A     VG  +++   + S ++  D                     +S RAR A+DD L+DPDVE+L GRA+GFA+ RL++AE AARI+ GE+E       RG+R   EG    G  S ++TPI+SGLASDAREFV  RV QARDGA+EV +A  + R    +A
Sbjct:   45 RKLPLSVHTEIWSSTWKWYRASFAESFAWSRKRKEEAKKREAHEKMSTLQGMVKEAREITHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDLIRVSLSEFSTGYREARDEEIKRVMAMDKSMIQSFLSERAGEVKHATSVIADAILEKDGDAGGSSSREEGEQSSSAMR--SAPAPPSHNNAAPCVSSVGRPQERPGTVSSTTAASDAESHPNNDPGHADLDGGATRFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAEEAARIITGEEEE------RGERKRPEGVGEGG--SDTETPIISGLASDAREFVAARVGQARDGAKEVVEAAMDARTQRRAA 386
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BLAST of mRNA_A-nodosum_M_contig1113.8.3 vs. uniprot
Match: D8LCT5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT5_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 2.370e-64
Identity = 134/275 (48.73%), Postives = 180/275 (65.45%), Query Frame = 1 
Query:    1 RKLPLSVHLKVWSSTFKSYGQSFEETFNWDRRRQEQTIKDNAAKSVEALKEIAKDVREATHNTPEDLEKSKKALRELLAEIHENRDGLKSAAQEKLDLIRFSLSEFSAGYREARDQELKRIMAMDKNVLQGFVEERWEEVKRASSILSDALL--------SDSDDDSRKASSA-----AKPSAATATTKAGDVATGAGGVGDKDQEAVLGSLSSPRD--------------------LMSQRARDALDDFLKDPDVEQLLGRARGFAKGRLVQAE 726
            RKLPLSVH ++WSST+K Y +SF E+F W R+R+E+  K  A + +  L+ + K+ RE THN+PEDLEKSK+AL+EL+ EIHENRD LKSAAQEKLDLIR SLSEFS GYR+ARD+E+KR+MAMDK++LQ F+ ER  EVK A+S+++DA+L        S S ++  ++S A     A PS   A   A  VA        ++Q   + S ++  D                     +S RAR A+DD L+DPDVE+L GRA+GFA+ RL++AE
Sbjct:   24 RKLPLSVHTEIWSSTWKWYRESFAESFAWSRKRKEEAKKREAHEKMNTLRGMVKEAREVTHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDLIRVSLSEFSTGYRQARDEEIKRVMAMDKSMLQSFLSERAGEVKHATSLIADAILEKDGGAGGSSSREEGGRSSPALRSAPAPPSINNAAPDASSVAR------PREQPGTVSSTTAASDAESHPSNDPGHADLDGGATRFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAE 292
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1113.8.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJF4_9PHAE1.080e-8249.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCT5_ECTSI2.370e-6448.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1113contigA-nodosum_M_contig1113:172103..177131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1708
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006830.1
Cds size780
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1113.8.3prot_A-nodosum_M_contig1113.8.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1113 175787..176566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866508.5885599-UTR-A-nodosum_M_contig1113:172102..1722971680866508.5885599-UTR-A-nodosum_M_contig1113:172102..172297Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1113 172103..172297 +
1680866508.600126-UTR-A-nodosum_M_contig1113:173881..1739321680866508.600126-UTR-A-nodosum_M_contig1113:173881..173932Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1113 173882..173932 +
1680866508.6102462-UTR-A-nodosum_M_contig1113:174664..1747591680866508.6102462-UTR-A-nodosum_M_contig1113:174664..174759Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1113 174665..174759 +
1680866508.6178746-UTR-A-nodosum_M_contig1113:175764..1757861680866508.6178746-UTR-A-nodosum_M_contig1113:175764..175786Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1113 175765..175786 +
1680866508.6367095-UTR-A-nodosum_M_contig1113:176566..1771311680866508.6367095-UTR-A-nodosum_M_contig1113:176566..177131Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1113 176567..177131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866508.6284487-CDS-A-nodosum_M_contig1113:175786..1765661680866508.6284487-CDS-A-nodosum_M_contig1113:175786..176566Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1113 175787..176566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1113.8.3

>prot_A-nodosum_M_contig1113.8.3 ID=prot_A-nodosum_M_contig1113.8.3|Name=mRNA_A-nodosum_M_contig1113.8.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=260bp
MAMDKNVLQGFVEERWEEVKRASSILSDALLSDSDDDSRKASSAAKPSAA
TATTKAGDVATGAGGVGDKDQEAVLGSLSSPRDLMSQRARDALDDFLKDP
DVEQLLGRARGFAKGRLVQAEAAARILKGEDEAVGAQSARGDRTDAEGAA
RSGPESSSDTPILSGLASDAREFVKERVAQARDGAREVADAVAEVRASHP
SAPGEAGDDGVDGGDDSRKLKAEERTGGRGGEEKANGKGGDGDVVEDRGN
RRKGGDGEK*
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mRNA from alignment at A-nodosum_M_contig1113:172103..177131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1113.8.3 ID=mRNA_A-nodosum_M_contig1113.8.3|Name=mRNA_A-nodosum_M_contig1113.8.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5029bp|location=Sequence derived from alignment at A-nodosum_M_contig1113:172103..177131+ (Ascophyllum nodosum dioecious)
AGGAAATTACCTCTGTCGGTTCACCTCAAAGTATGGTCGTCCACGTTCAA
GTCCTACGGGCAATCGTTCGAGGAAACGTTCAACTGGGACCGTCGGCGGC
AGGAACAGACCATCAAGGACAATGCCGCGAAGAGCGTGGAGGCGCTGAAG
GAGATCGCCAAGGACGTTCGCGAGGCCACTCACAACACTCCCGAGGTACG
CTCACAAAACTATTGTAAGCAGTCCACTCACAGCACTGTATCGTATGCGG
TACACTCACAACACTATATTGTAGGCAGTACACTCACAACACCATCGTAT
ACAGTACACTAAATCGCATTCTGTATACTATATCATATGATGTACACTAT
ATCGCATGCAGTACACTATATCGTATGTTGTACACCATATCATATGATGT
ACACTATATCGCATGCTGTACACTATATGGTATGCTGTTGTTGGCGGCAG
TGGTGTTGGTGTACAGCATGAAATGATGCAGAGGGAGGGTTGTGTTTTGC
CAGTTGAACTTTTTTATAGGACGTGCAGCAGTATGGATGGATGGATGTAT
GGTCATCACATACTGTATAGCAAGAGTATGGATCAACCGGGTAAGGTTGC
CAGTCCTGCACGTGGTCAGCTGAACAGGGAAAATTCATATTTCACCGTCA
CCGTTGGCGCCTGAGACAGAATTTGGTCTCGCGAGACGGGTTTGGCAGTC
CCGTCCGCGTCAGCTTGCTCATCTCCATACTCAGGCTGAATCTGATGCTT
ACTCACGGGATTTCTCCCGATTTCCGCGGCGGCGTCCATTTAGTTATTTA
AACCGCCATACGCCATCGGGTCAGTCCCGAATTTATCAGGTCACGCGATT
GTGTACCGATGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTC
CAGTAACGGGTGCTGTGTTTGCATCACCATGGGCCAATTAACATGCGCCT
CTCTTTCCCACACCCACTATTGGTATGAAGTGGGTATGTTGAAAGTACCG
GCAGCAGTGTCACTCCCCGTTCTCTCTCTCTCTCTGACATCTCACAAGTT
GTTTAGGTTCTAGAACTCTACCTTTATATAAAAAAATAATAGTTCACGTG
TACAAAATGTGCTTGTTCCTCTTATTTCCtTTTTTTTTTCTTCTTCTTTT
TCCCCACTTTTTTGCACATATATGCTGTTTTCCTTCTTTTTTATATTTAT
CTTGTTTTCAGATACGACCGAGGCAAAAAAAAAAAAGAGTATTTTTCATT
TTCTCCTTCCCTTCCTTACCCATGTGTTGATAGATCCTGTATACTAATGG
CTACTGTATAGTAAACGTAAGGTTTCTATGAGTACGACCTCTGCATTCTC
GGGCCAAATCGATCCTGATCCTGCGTTAAAAAAGAGAATAAATAGTAATA
GTACAATTTAGCGCGAAGCCACAACGCCGGGATTAGGAGGAGAGTTTTTA
CAGACGCCTTGTGTTTTTTTTCGAAGAGTTGAGTACCTGTCCGTTTGTAG
GAGGGTGATCCCCCCCCCCCCGCCCTCCAGCGCCCCTCATTGTCTCGTAT
AAACCCAAGGCTCTAATTATTGTTAATGAGGGTTGTCCGAGTCTGACCCC
CACGAATTCGTCTCAACAATTTGTCTATTGACTGAAATTTTCCGTCGGGT
ACCGTAAGTACTGCACCGCTAAAACATGGACACTGCTGCTCGCCCCCCTC
CCATCTACCCGTTGTTGATGTTTTTTGGGGGTTCCGCTATTCTGTTTCGG
GGTTCTTGATTTTTCTCGCGAGCGCGCAGGATCTGGAAAAATCCAAGAAG
GCGCTGAGGGAGCTCCTGGCTGAGATTCACGTGAGGCACACACGCTAGCG
TTTGAAAGGTCGAAGTTGCCTCCCTCTCTCCTAATAGTAGCGATTGCACC
CGCCGGGAGATGTGTAGTCCCATGAGCCAGCGGTACACGGTGATGGGACA
ATCGTGGTTCAAATCTTGCGTTGCGTGTGGCCGTCGGCGTTATTATAGTA
GCCCATATATAGAAAACTCGACCGAGCGTTGTTGATCCTTCTATTGATAG
CATTCCGAAGTGTAGAGTCACATGTGAGGAGTCTATGAGCAGGGCTGCTG
TGCAAAATGGACCGATCTCCTCGCACGGTGTGATGATTTTGTTTTGTAGG
CCATGTAAGCCATTCCGACGCGCGCAAACCTCCCCTTGTTGCCGAATGGT
TAGTCTAGAGCTGTACGTTGTTGCAATCTCGCGTTCTCGTAGAGCACTAA
AGGAGCGCTTGCTGACTGTCTTAAGTCTCTCCCCAAAACGTTGCATACTG
TCTAAGGCCGATGAAAAAAGCCAAGACATCTCGAGGAAAACCCTGGCTTT
TTTTTTTTATCTGCTGATAAAAATATCCGGCCGCGCCACAATCGGCACCC
CGATCGCGGCTCTCCATGCCAACCTCTACGTTTTTTTGTTTTTTTTTCTG
TCCTTATGTGAGTTCCATTTTTTTTGCTTTTTTCTGTCCCAGATGTGTGT
TCCATGTATTCAATGTTTTTTGCCCCTTTGTGTGTTCCATTTTTTTACTG
TTTTCTGTCCAGGAGAACCGCGACGGGCTCAAGTCTGCGGCCCAAGAGAA
GCTCGACTTGATCCGTTTTTCGCTCTCCGAGTTTTCCGCGGGGTATCGCG
AAGCTCGGTGAGCGAAAAGTCGCGACGAACTTCACGAATACCGATAGGAC
CGGTTGAGAACCCGAACAGAACCGGCCTGAACCGAACCGAACCTAAAACA
GACATAAACCGCCAGAAGCGAAGCCGAACTGGACCGAACCAAATGAAGCA
GAACCGATGTGAGAGCCAACCGAACGAATTACAACCCCCCAACGAGACCG
GAACGAACCAACCGAGAAACATTCGAACCAGACTGAATCGAACGAACGGA
ACGGACGGAACGGATTCACCACATCAGCGATGGGTGATAGAATGATTGGA
ATGATTGGCGCTTTTGCTTACCTGGTATGTTTTATCTCCCACCCCACCTC
ATTTTTATCGTGTCCAGTATACTATTAATAGGTAACCACGCCCGAATTCA
AATTAAGAAGAAAAAAAAATGTTATACATTTATTTCTTTCCTCTCAATCA
GGGGAATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAAC
CTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCATACATACATA
CATACCAAAGGAGTAAATATATAGATAACTCTCTCTCTCTAATCATTTTT
GAGGTACGGTTGTTTTTTATGTAGCGCTATGCAAGTATACCGTAATGTTC
AGAGCGAACACCCCCCACGGGGAGAGATCCTCATTCACCTCTTGTTCACT
TGAATACAGTAAAGATTGGCGCTCAAACGTATTTTGGTCGAAAAGCCCTT
GGCAAGATATTCCCATCGTCGCAGCGTTGTTTGATGGAAGGGGTCTTGCT
CTATATAGTCAAGAGAAAGGTGAATGGGGGTTTCCCCGTGGGTGGCGTTT
TTCCAAACATTACGTTACATATGTGGCACATATATTGGGTTTCCCCGCGC
CGTCCTGACGTCTTCACATATTCCTCTCCCCTTCGTCTCTCTTTTTCTTT
CTTTATAACCATACACTGTTATATATATATACTGTATATGTTATATTTAT
TTATGTAAATAGCGACCAAGAATTAAAGCGGATAATGGCGATGGACAAGA
ACGTGCTCCAGGGCTTCGTCGAAGAGCGGTGGGAGGAGGTCAAGCGCGCG
TCGTCGATTCTTTCCGACGCTCTCCTCTCCGACAGCGACGACGACAGCCG
GAAGGCATCATCTGCCGCCAAGCCCTCCGCGGCGACGGCGACGACGAAGG
CTGGCGATGTGGCGACGGGCGCGGGAGGCGTCGGTGACAAGGATCAAGAG
GCGGTGCTTGGCTCCCTGTCATCGCCCCGCGACCTTATGTCCCAGCGGGC
GCGGGACGCGTTGGACGACTTTCTGAAGGACCCGGACGTCGAGCAGCTCC
TGGGGCGCGCGCGAGGGTTCGCGAAGGGGAGGCTGGTGCAGGCGGAAGCG
GCCGCCCGGATTCTAAAGGGGGAAGACGAAGCGGTCGGGGCACAGAGCGC
CCGGGGGGATCGCACCGATGCGGAAGGTGCCGCGCGATCGGGCCCCGAAA
GTTCTTCTGACACCCCGATTCTGTCAGGGCTGGCAAGCGATGCTCGGGAG
TTCGTAAAGGAGAGGGTGGCTCAGGCCAGAGACGGGGCGCGAGAAGTGGC
CGACGCGGTTGCGGAGGTTCGAGCATCGCATCCGTCGGCGCCTGGAGAGG
CCGGCGATGACGGCGTGGATGGTGGTGATGACAGCAGGAAGTTGAAGGCT
GAGGAAAGGACGGGGGGACGGGGGGGTGAAGAGAAGGCGAATGGAAAAGG
CGGTGATGGTGATGTAGTGGAGGACCGCGGTAACAGAAGAAAAGGCGGCG
ATGGAGAAAAATGAGGGCTGACGGGGGGTGGGGAATCAGGAGACTACGGT
GGTAGAAGCGTCTTTGTCGGGGGAGGAGGGACGTCATCATTATTCTAGGT
GTCGTTTTTGTGATCGACTTGGGGTTGTGCGTTGTTCCAGATGAAGGGAT
CCTACTATGTGTATACGTCAAGCCGTCCTATTATAGTGACCGGGGGTTTT
GACTGAAGGAAGTGGTAGAATTGCACCCGCTCGACCGATGTGTAGTCGAT
ATATAGGCTTGACATTTTTGTGCATGGATATCGGGAGAATGTAACCGCCC
TTTTTGGGTGCGCAAGGTTGCAGCTCTCGATGAAAGTTTCGTTGCTTATT
ACTTTCACAGCGAGTAAGGGTCGCTTTAGACGCAGCCAAAATTCATCGGA
GGCGATACCGTTCCCCACCCACCCAAAAAAAAATATTTCATTCCATTTTT
TGGTGTTCCAAATTTTGAAAGCAGCAAATTACGCCTGCTGATGGCTTGTA
CGACATCTCTCAGGGGGGTGTTCTGGGGAGGTTGCGTCAGAAGCATCAGT
ATCATGACACGGCTATTAAGTCGCCCCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1113:172103..177131+

>mRNA_A-nodosum_M_contig1113.8.3 ID=mRNA_A-nodosum_M_contig1113.8.3|Name=mRNA_A-nodosum_M_contig1113.8.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at A-nodosum_M_contig1113:172103..177131+ (Ascophyllum nodosum dioecious)
ATGGCGATGGACAAGAACGTGCTCCAGGGCTTCGTCGAAGAGCGGTGGGA
GGAGGTCAAGCGCGCGTCGTCGATTCTTTCCGACGCTCTCCTCTCCGACA
GCGACGACGACAGCCGGAAGGCATCATCTGCCGCCAAGCCCTCCGCGGCG
ACGGCGACGACGAAGGCTGGCGATGTGGCGACGGGCGCGGGAGGCGTCGG
TGACAAGGATCAAGAGGCGGTGCTTGGCTCCCTGTCATCGCCCCGCGACC
TTATGTCCCAGCGGGCGCGGGACGCGTTGGACGACTTTCTGAAGGACCCG
GACGTCGAGCAGCTCCTGGGGCGCGCGCGAGGGTTCGCGAAGGGGAGGCT
GGTGCAGGCGGAAGCGGCCGCCCGGATTCTAAAGGGGGAAGACGAAGCGG
TCGGGGCACAGAGCGCCCGGGGGGATCGCACCGATGCGGAAGGTGCCGCG
CGATCGGGCCCCGAAAGTTCTTCTGACACCCCGATTCTGTCAGGGCTGGC
AAGCGATGCTCGGGAGTTCGTAAAGGAGAGGGTGGCTCAGGCCAGAGACG
GGGCGCGAGAAGTGGCCGACGCGGTTGCGGAGGTTCGAGCATCGCATCCG
TCGGCGCCTGGAGAGGCCGGCGATGACGGCGTGGATGGTGGTGATGACAG
CAGGAAGTTGAAGGCTGAGGAAAGGACGGGGGGACGGGGGGGTGAAGAGA
AGGCGAATGGAAAAGGCGGTGATGGTGATGTAGTGGAGGACCGCGGTAAC
AGAAGAAAAGGCGGCGATGGAGAAAAATGA
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