prot_A-nodosum_M_contig1107.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1107.18.1
Unique Nameprot_A-nodosum_M_contig1107.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length48
Homology
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BLAST of mRNA_A-nodosum_M_contig1107.18.1 vs. uniprot
Match: D8LNS9_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.450e-8
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0 
Query:    1 MTAGLYEGATFYFLVTIPPSYPSHAPSAV 29
            MTAGL+EGATFYF++TIPPSYP HAP+ V
Sbjct:   51 MTAGLFEGATFYFILTIPPSYPFHAPTVV 79
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1107.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNS9_ECTSI6.450e-879.31UBC core domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 4..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1107contigA-nodosum_M_contig1107:258437..259313 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1107.18.1mRNA_A-nodosum_M_contig1107.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1107 258437..259818 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1107.18.1 ID=prot_A-nodosum_M_contig1107.18.1|Name=mRNA_A-nodosum_M_contig1107.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=48bp
MTAGLYEGATFYFLVTIPPSYPSHAPSAVYLRVCHLTSTSTRALYLFP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD