mRNA_A-nodosum_M_contig1107.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1107.18.1
Unique NamemRNA_A-nodosum_M_contig1107.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1107.18.1 vs. uniprot
Match: D8LNS9_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.680e-8
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:  491 QVGVSMTAGLYEGATFYFLVTIPPSYPSHAPSAV 592
            +VGVSMTAGL+EGATFYF++TIPPSYP HAP+ V
Sbjct:   46 KVGVSMTAGLFEGATFYFILTIPPSYPFHAPTVV 79
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1107.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNS9_ECTSI1.680e-879.41UBC core domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1107contigA-nodosum_M_contig1107:258437..259818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNS9
PFAMsDUF4477,UQ_con
Model size649
Max annot lvl2759|Eukaryota
KEGG koko:K10579
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.06e-08
EggNOG OGsKOG0420@1|root,KOG0420@2759|Eukaryota
DescriptionNEDD8 transferase activity
Cds size144
COG categoryO
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866498.3107672-CDS-A-nodosum_M_contig1107:258436..2585071680866498.3107672-CDS-A-nodosum_M_contig1107:258436..258507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1107 258437..258507 -
1680866498.3288088-CDS-A-nodosum_M_contig1107:259240..2593131680866498.3288088-CDS-A-nodosum_M_contig1107:259240..259313Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1107 259241..259313 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866498.3383756-UTR-A-nodosum_M_contig1107:259313..2598181680866498.3383756-UTR-A-nodosum_M_contig1107:259313..259818Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1107 259314..259818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1107.18.1prot_A-nodosum_M_contig1107.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1107 258437..259313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1107.18.1

>prot_A-nodosum_M_contig1107.18.1 ID=prot_A-nodosum_M_contig1107.18.1|Name=mRNA_A-nodosum_M_contig1107.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=48bp
MTAGLYEGATFYFLVTIPPSYPSHAPSAVYLRVCHLTSTSTRALYLFP
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mRNA from alignment at A-nodosum_M_contig1107:258437..259818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1107.18.1 ID=mRNA_A-nodosum_M_contig1107.18.1|Name=mRNA_A-nodosum_M_contig1107.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1382bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:258437..259818- (Ascophyllum nodosum dioecious)
TATTATTATTATTATTATTATGGCGGCCATCGAGGGGTTGGAGCGGCTCG
TCGCGTCTCGATCTGCTCAATCAAGACGATCATACATGCATAAAATAGCT
TGTTCAACGAACGGCATCGAGGCAAAAGTATTATCTGTAACGTAATGTTT
AAATCCTCTAGGAATATATCGCTCGCCAGATGACGTACGAACTATTTTAC
AAATCTCTCAGTTGCTCAAATTTAAGTACATTTAAGTAGAACTATTGGCT
AGACCTCACTTTCTATAGAAAGGTTGAAATTAAAAAATTATGCGCGCCAT
ATTTTTGAAGCGGAACCCCAAACTGGCGTACTAATCACCTCATTTTGGAT
CATGCTCTGTAGTTACCCCCCCCAGATATGTGCGAAAATGGTTGATTTCG
TATCGAGCCGAGGCGCATAATATCCGCTGACCTCCCCCAAACTGCATCCT
CTACGGTACTACGGTACTTCGGTACACTTGGATAGTCCCTCAGGTTGGGG
TTTCGATGACCGCGGGCTTGTACGAGGGGGCGACCTTCTATTTCTTGGTG
ACCATACCTCCGAGCTACCCTTCCCACGGTGGGGTCTAAATCTTGACGTT
TTCTGTTCGCTCTTCCCTTGTCGTCGTAACAAGCAAAATATTATCGTTCT
CTTGGCGTCCCCATGTTTGACTCTCTGACTCTCTGACTCTCTAACTCTTT
CACCTCTGGAGCTCTTTGGCTGTTTATACGAGTGTAGCTGTTTCTCGTCT
TTCTCTGGCTCTTTTTTTATTTTTATTTTTACATAAGGCATAAGGCAAAT
GGTATTGTTCAAAATAGTTCATTCATTCCCCTTGATAAGTAGAGCTGGCG
TTAATACCCTAGTCCTTCTCGTACTCCAACGGCTATAACATGTTTCGCGA
ATGTTCAGGGCAATGCATCCTGTCGTTGATTGAGTTTCTCCGTATCGCAT
TTGATAAGTGTCGCGATTTTTTTACCGGCCATGCAGATTTTGTGGTGTGC
AGGATTGGCTGCATTTTCCCCGCAATTCGCTACAGTATTATTGGCTCGGG
TTATCTCTCTGCGCTATCATGGACTAGCTCTAGAGTTAAGCTATTAATAA
TATTAATAAGAAGAATTCTCAGTAACCAAACTTGCCTACTCGCATCAGTC
GGCACCCGCTAGCGTGATTTTCGCGCTGATGCACAACTGAAGCAGGTGTG
CTATGCGCGACTGCTCCGTTCACACGTCTACGCATGTCCGCTCAGGGTCA
CAAACTGATATAACACTCTCTGTTTCCCCCACCTTCCCCCTCTATCCGGC
CTCTACCACAGCGCCTTCCGCGGTGTACCTCCGAGTGTGTCACCTAACAT
CGACCTCCACTCGGGCTTTGTATCTCTTCCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1107:258437..259818-

>mRNA_A-nodosum_M_contig1107.18.1 ID=mRNA_A-nodosum_M_contig1107.18.1|Name=mRNA_A-nodosum_M_contig1107.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=144bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:258437..259818- (Ascophyllum nodosum dioecious)
ATGACCGCGGGCTTGTACGAGGGGGCGACCTTCTATTTCTTGGTGACCAT
ACCTCCGAGCTACCCTTCCCACGCGCCTTCCGCGGTGTACCTCCGAGTGT
GTCACCTAACATCGACCTCCACTCGGGCTTTGTATCTCTTCCCA
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