prot_A-nodosum_M_contig1097.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1097.3.1
Unique Nameprot_A-nodosum_M_contig1097.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length79
Homology
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BLAST of mRNA_A-nodosum_M_contig1097.3.1 vs. uniprot
Match: A0A6H5JHM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM2_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.020e-6
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:   11 FVRALPDEYSLVKETLQAMRNRDRDEIIRMVSTRHSNLPQKKGAQRSSRQPEQAFVSSESGSRSGA 76
            FV   P EY  VK  L+     +RDEI+R+ S  HSNLP+++ A +  R+ E AF++S+  S  GA
Sbjct:  215 FVAVFPPEYQQVKFVLETATTMNRDEIVRIASMAHSNLPEERKASKGKRKTEHAFLASDGSSGGGA 280
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHM2_9PHAE5.020e-642.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:41669..41905 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.3.1mRNA_A-nodosum_M_contig1097.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1097 41669..41906 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1097.3.1 ID=prot_A-nodosum_M_contig1097.3.1|Name=mRNA_A-nodosum_M_contig1097.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=79bp
RIPDAVLHARFVRALPDEYSLVKETLQAMRNRDRDEIIRMVSTRHSNLPQ
KKGAQRSSRQPEQAFVSSESGSRSGARRG
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