mRNA_A-nodosum_M_contig1097.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.3.1
Unique NamemRNA_A-nodosum_M_contig1097.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1097.3.1 vs. uniprot
Match: A0A6H5JHM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM2_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.020e-6
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   31 FVRALPDEYSLVKETLQAMRNRDRDEIIRMVSTRHSNLPQKKGAQRSSRQPEQAFVSSESGSRSGA 228
            FV   P EY  VK  L+     +RDEI+R+ S  HSNLP+++ A +  R+ E AF++S+  S  GA
Sbjct:  215 FVAVFPPEYQQVKFVLETATTMNRDEIVRIASMAHSNLPEERKASKGKRKTEHAFLASDGSSGGGA 280
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHM2_9PHAE5.020e-642.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:41669..41906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.8364766-CDS-A-nodosum_M_contig1097:41668..419051680866481.8364766-CDS-A-nodosum_M_contig1097:41668..41905Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 41669..41905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.3.1prot_A-nodosum_M_contig1097.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 41669..41905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.3.1

>prot_A-nodosum_M_contig1097.3.1 ID=prot_A-nodosum_M_contig1097.3.1|Name=mRNA_A-nodosum_M_contig1097.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=79bp
RIPDAVLHARFVRALPDEYSLVKETLQAMRNRDRDEIIRMVSTRHSNLPQ
KKGAQRSSRQPEQAFVSSESGSRSGARRG
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mRNA from alignment at A-nodosum_M_contig1097:41669..41906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.3.1 ID=mRNA_A-nodosum_M_contig1097.3.1|Name=mRNA_A-nodosum_M_contig1097.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=238bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:41669..41906+ (Ascophyllum nodosum dioecious)
CGGATCCCTGATGCAGTACTGCACGCACGTTTCGTCCGCGCGCTGCCCGA
CGAGTATTCCCTCGTCAAAGAAACGCTGCAGGCGATGAGGAACCGAGATC
GGGACGAGATCATCCGCATGGTCAGCACTCGTCACTCCAACCTGCCTCAA
AAGAAGGGGGCACAGCGATCTTCCCGACAGCCCGAGCAAGCATTCGTCTC
CAGCGAAAGCGGCAGCCGCAGCGGTGCGCGACGAGGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:41669..41906+

>mRNA_A-nodosum_M_contig1097.3.1 ID=mRNA_A-nodosum_M_contig1097.3.1|Name=mRNA_A-nodosum_M_contig1097.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=237bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:41669..41906+ (Ascophyllum nodosum dioecious)
CGGATCCCTGATGCAGTACTGCACGCACGTTTCGTCCGCGCGCTGCCCGA
CGAGTATTCCCTCGTCAAAGAAACGCTGCAGGCGATGAGGAACCGAGATC
GGGACGAGATCATCCGCATGGTCAGCACTCGTCACTCCAACCTGCCTCAA
AAGAAGGGGGCACAGCGATCTTCCCGACAGCCCGAGCAAGCATTCGTCTC
CAGCGAAAGCGGCAGCCGCAGCGGTGCGCGACGAGGT
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