prot_A-nodosum_M_contig10944.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10944.1.1
Unique Nameprot_A-nodosum_M_contig10944.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length238
Homology
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 2.510e-77
Identity = 125/231 (54.11%), Postives = 166/231 (71.86%), Query Frame = 0
Query:    8 RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 238
            RIP LLFADDLV +S +R  +  M   ++ W AENEMS GI KCG+M +      L + P RW++AG+ +PIV  YTYLGL F   LDV  M+ +++A G++LV  +TP+L  R IPVP+KVAVVRGV++PRLLFGAEV+GM  +IT  +QV +N+ +RMV GM+  +TVS+VA+WRE+  PPICA AAARRAR +QK  KL TW+  ++ +P+ HR  TW TGT  WMN+
Sbjct:  749 RIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNR 979          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 148 bits (374), Expect = 3.270e-37
Identity = 85/234 (36.32%), Postives = 127/234 (54.27%), Query Frame = 0
Query:    7 TRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPA-RWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLL-NQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 238
            T +  LLFADDLV LS     +++    +T W  + EM  G+ KC IM ++ P+S L      +W + GQ VP+V EY YLG      LD+   +  RV + K+ + +++PFL  R IP+ ++  V   +V P  L+GAE++G+ +  T P+  L  N + R+ G         T  + RE+  PP+ A+AAARR RA  K   L TWV  L + P   R +TW+TG   W+ +
Sbjct:  943 TTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG-------TYTGTLARELRIPPVAALAAARRTRAFFKFPSLKTWVSTLCQHPLRKRKKTWLTGCQYWLRR 1169          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR)

HSP 1 Score: 141 bits (355), Expect = 1.060e-34
Identity = 84/251 (33.47%), Postives = 132/251 (52.59%), Query Frame = 0
Query:    4 GVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVV----------------NKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 238
            GV   +  LLFADD V ++ S   + R    +T W+ ++EMSV   KCGIM +                NK   +  Q P  ++I G +VP VSEY YLG+RFT DL + SM+    +KG++ +  +   L  + +PV +K+  ++  +   L +GAEV+GM+    + +Q ++N+  R+V G  RN+ +  +    E+G   +  +AA +RARA+ K     TW+  L    F  R  TWVTG   W+ +
Sbjct:  487 GVSEAVSGLLFADDAVVMAESESALRRNLDLLTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRIR--SELGIQSVANIAAVKRARAVAKWPGCKTWIATLSTSQFRSREWTWVTGNIKWLKR 735          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR)

HSP 1 Score: 139 bits (350), Expect = 1.580e-34
Identity = 76/228 (33.33%), Postives = 125/228 (54.82%), Query Frame = 0
Query:    9 IPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWM 236
            IP LLFADD V L+ S + ++    ++ EW    +MS+ + KCG++V         +   +  ++G  + ++S+YTYLGL  TADLD+ ++++DR  K      +L PFL  R +P  ++  +VR V++P   +G E+YGM+ A   P+Q ++++  R + G + N      A + E+  P +    A  RARA+ K     T +  L+  PF  R  TW+TGT  W+
Sbjct:  167 IPGLLFADDAVILAESPQALQEDLNRIDEWCGRWKMSLNVSKCGVVVFGP------EDGVQLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITKWSSSRTTIGSLLCSPFKDRSATWMTGTQRWL 386          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 109 bits (273), Expect = 8.980e-24
Identity = 68/231 (29.44%), Postives = 118/231 (51.08%), Query Frame = 0
Query:    8 RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 238
            ++P LLFADD V  + S   +      + +W  + +M + I KCG+MV N       Q   +++ A   +P V  Y YLG+    +LD+ ++++DR  K ++ +  + P +    IP+P++V +++ V+IP   FG+E+YGM+   T P+Q ++++  R       N    T   + E+    I   AA  R RA  K R   T + ++++  F     TW TGT  W+ +
Sbjct:  453 QVPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMVFNSN----EQRAIKYKNAN--IPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRCAMACPANYCRLTA--YEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRR 675          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A1R1YIL1_9FUNG (Transposon TX1 uncharacterized n=5 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YIL1_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 1.270e-23
Identity = 68/228 (29.82%), Postives = 114/228 (50.00%), Query Frame = 0
Query:    4 GVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTG 231
            G+ +RIP LLF DD+V L++S   ++     + EW+   EM+    KCGIM ++  L+    TP      GQ +    +YTYLG    +  DV   + +   K ++ +     FLR   +   +K+  +  V+IP   +  E +GM++A  +P+Q  +N+V RMV  + +++ +    IW E+G   +    +  R RA  K     TW+ ++ + P   R  T VTG
Sbjct:  336 GLTSRIPGLLFVDDVVLLAKSSADLQAALNTMPEWSDTWEMAANPSKCGIMKISVDLTN-ELTPQ-----GQKINSTDQYTYLGYIMNSKWDVSGTIKNNKNKVRKAMYAAYSFLRRSNVLTTLKIKFINSVLIPIECYREETFGMSEARCKPIQSEINKVIRMVTNVGKSAAMER--IWNELGITSVFMRTSTARERAYHKWPTSKTWISEIFKTPIKARMATCVTG 555          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR)

HSP 1 Score: 105 bits (262), Expect = 2.210e-22
Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 0
Query:    2 KGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 211
            +G ++ R   L FADDLV L  ++  + +   Q+  W    EM +  +KCG+MV             R    G  +P    YTYLG+    +L   +M   R  KG   +  L   LR+  + +  K  +V+G+++P +L+GAEVYG     T   QV++N+  RMV G     T    A+WR++G  P+ A AA+R+ RA  K   L T
Sbjct:  196 EGAIENRGAGLAFADDLVVLGATKGILRKAVVQIELWAGRWEMEINPKKCGVMVFGGDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAGNGGALT----AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.090e-22
Identity = 52/138 (37.68%), Postives = 86/138 (62.32%), Query Frame = 0
Query:   99 MLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWM 236
            M S  + KG++    + PFL    IP+ ++  ++  V++ RLL+GAE+YGMNK++T   Q LL++  +++ G++    VS + +W E G PPI A+AA+RRAR  QK + L T +  L++ P+     TW++GT  W+
Sbjct:    1 MASACLKKGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWL 138          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR)

HSP 1 Score: 101 bits (251), Expect = 7.820e-21
Identity = 72/237 (30.38%), Postives = 112/237 (47.26%), Query Frame = 0
Query:    2 KGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 238
            +G ++     L FADDLV +  +R  + +   QV  W    EM +  +KCG++          +      I    +P V  YTYLG+    +L   +++  R  KG+  V  L   LR+  + +  K  +V+G+VIP +L+GAEVYG     T  MQ ++N+  +MV G    +  +  A+ R++G  PI A AA R+ RA  K   L T    + +       R   T TN W  +
Sbjct:  626 EGRIEEEGAGLAFADDLVVMGDNRTILRKAVIQVEMWARRWEMEINPKKCGVITFYGS----EEERVGIHIGEGPIPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAG----NCCALTAVRRDLGMMPIQAAAAGRQERAWAKFPNLRTIGASVFD-------RGGTTTTNGWTGR 847          
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A4P9X411_9FUNG (Reverse transcriptase domain-containing protein n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X411_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 1.430e-20
Identity = 68/228 (29.82%), Postives = 109/228 (47.81%), Query Frame = 0
Query:    8 RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMN-RNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEE-----PFIHRCRTWV 229
            R+  L+FADD+V ++ SR  ++R     T W  +NEM VGI+KCG M +           A   + G  VP V+ YTYL +     L   +M   R  +G   +  L P L    +PV M+V +++ +++P L +GAE+     A   P+Q + N     V  ++ R   V+   +  E+  P +  +    R RAL K  +L TW   +++      P   R R+W+
Sbjct:   38 RLRLLMFADDVVLVADSRDALQRACTAFTRWADDNEMQVGIKKCGAMWIGGERP---DGTAPLLLQGAAVPEVASYTYLRIALDDHLRPSTMTRYRAQRGNAALHALRPTLGNAHLPVAMRVMLIKSILLPILTYGAELLPSAFADAAPLQRVANHALATVLQVHHRYHPVAHEVMTTELNVPLVATVMRTARQRALHKWPQLRTWAAAIIKATPAAIPRAWRRRSWI 262          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE2.510e-7754.11Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM3.270e-3736.32Reverse transcriptase domain-containing protein n=... [more]
A0A0F9ZBM3_9MICR1.060e-3433.47Endonuclease-reverse transcriptase n=2 Tax=Nosema ... [more]
A0A0R0LX01_9MICR1.580e-3433.33RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
L7JX89_TRAHO8.980e-2429.44RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R1YIL1_9FUNG1.270e-2329.82Transposon TX1 uncharacterized n=5 Tax=Smittium cu... [more]
A0A1J5WU32_9MICR2.210e-2232.86Reverse transcriptase domain-containing protein n=... [more]
A0A7S3PFX4_9STRA3.090e-2237.68Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A1J5WUS4_9MICR7.820e-2130.38Reverse transcriptase domain-containing protein n=... [more]
A0A4P9X411_9FUNG1.430e-2029.82Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47027FAMILY NOT NAMEDcoord: 8..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10944contigA-nodosum_M_contig10944:1839..2552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10944.1.1mRNA_A-nodosum_M_contig10944.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10944 1839..2552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10944.1.1 ID=prot_A-nodosum_M_contig10944.1.1|Name=mRNA_A-nodosum_M_contig10944.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=238bp
MKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQK
CGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSML
SDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMN
KAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRA
RALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK
back to top