mRNA_A-nodosum_M_contig10944.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 262 bits (670), Expect = 2.510e-77 Identity = 125/231 (54.11%), Postives = 166/231 (71.86%), Query Frame = 1
Query: 22 RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 714
RIP LLFADDLV +S +R + M ++ W AENEMS GI KCG+M + L + P RW++AG+ +PIV YTYLGL F LDV M+ +++A G++LV +TP+L R IPVP+KVAVVRGV++PRLLFGAEV+GM +IT +QV +N+ +RMV GM+ +TVS+VA+WRE+ PPICA AAARRAR +QK KL TW+ ++ +P+ HR TW TGT WMN+
Sbjct: 749 RIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNR 979
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM) HSP 1 Score: 148 bits (374), Expect = 3.270e-37 Identity = 85/234 (36.32%), Postives = 127/234 (54.27%), Query Frame = 1
Query: 19 TRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPA-RWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLL-NQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 714
T + LLFADDLV LS +++ +T W + EM G+ KC IM ++ P+S L +W + GQ VP+V EY YLG LD+ + RV + K+ + +++PFL R IP+ ++ V +V P L+GAE++G+ + T P+ L N + R+ G T + RE+ PP+ A+AAARR RA K L TWV L + P R +TW+TG W+ +
Sbjct: 943 TTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG-------TYTGTLARELRIPPVAALAAARRTRAFFKFPSLKTWVSTLCQHPLRKRKKTWLTGCQYWLRR 1169
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR) HSP 1 Score: 141 bits (355), Expect = 1.060e-34 Identity = 84/251 (33.47%), Postives = 132/251 (52.59%), Query Frame = 1
Query: 10 GVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVV----------------NKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 714
GV + LLFADD V ++ S + R +T W+ ++EMSV KCGIM + NK + Q P ++I G +VP VSEY YLG+RFT DL + SM+ +KG++ + + L + +PV +K+ ++ + L +GAEV+GM+ + +Q ++N+ R+V G RN+ + + E+G + +AA +RARA+ K TW+ L F R TWVTG W+ +
Sbjct: 487 GVSEAVSGLLFADDAVVMAESESALRRNLDLLTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRIR--SELGIQSVANIAAVKRARAVAKWPGCKTWIATLSTSQFRSREWTWVTGNIKWLKR 735
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR) HSP 1 Score: 139 bits (350), Expect = 1.580e-34 Identity = 76/228 (33.33%), Postives = 125/228 (54.82%), Query Frame = 1
Query: 25 IPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWM 708
IP LLFADD V L+ S + ++ ++ EW +MS+ + KCG++V + + ++G + ++S+YTYLGL TADLD+ ++++DR K +L PFL R +P ++ +VR V++P +G E+YGM+ A P+Q ++++ R + G + N A + E+ P + A RARA+ K T + L+ PF R TW+TGT W+
Sbjct: 167 IPGLLFADDAVILAESPQALQEDLNRIDEWCGRWKMSLNVSKCGVVVFGP------EDGVQLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITKWSSSRTTIGSLLCSPFKDRSATWMTGTQRWL 386
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO) HSP 1 Score: 109 bits (273), Expect = 8.980e-24 Identity = 68/231 (29.44%), Postives = 118/231 (51.08%), Query Frame = 1
Query: 22 RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 714
++P LLFADD V + S + + +W + +M + I KCG+MV N Q +++ A +P V Y YLG+ +LD+ ++++DR K ++ + + P + IP+P++V +++ V+IP FG+E+YGM+ T P+Q ++++ R N T + E+ I AA R RA K R T + ++++ F TW TGT W+ +
Sbjct: 453 QVPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMVFNSN----EQRAIKYKNAN--IPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRCAMACPANYCRLTA--YEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRR 675
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A1R1YIL1_9FUNG (Transposon TX1 uncharacterized n=5 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YIL1_9FUNG) HSP 1 Score: 108 bits (271), Expect = 1.270e-23 Identity = 68/228 (29.82%), Postives = 114/228 (50.00%), Query Frame = 1
Query: 10 GVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTG 693
G+ +RIP LLF DD+V L++S ++ + EW+ EM+ KCGIM ++ L+ TP GQ + +YTYLG + DV + + K ++ + FLR + +K+ + V+IP + E +GM++A +P+Q +N+V RMV + +++ + IW E+G + + R RA K TW+ ++ + P R T VTG
Sbjct: 336 GLTSRIPGLLFVDDVVLLAKSSADLQAALNTMPEWSDTWEMAANPSKCGIMKISVDLTN-ELTPQ-----GQKINSTDQYTYLGYIMNSKWDVSGTIKNNKNKVRKAMYAAYSFLRRSNVLTTLKIKFINSVLIPIECYREETFGMSEARCKPIQSEINKVIRMVTNVGKSAAMER--IWNELGITSVFMRTSTARERAYHKWPTSKTWISEIFKTPIKARMATCVTG 555
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR) HSP 1 Score: 105 bits (262), Expect = 2.210e-22 Identity = 69/210 (32.86%), Postives = 104/210 (49.52%), Query Frame = 1
Query: 4 KGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 633
+G ++ R L FADDLV L ++ + + Q+ W EM + +KCG+MV R G +P YTYLG+ +L +M R KG + L LR+ + + K +V+G+++P +L+GAEVYG T QV++N+ RMV G T A+WR++G P+ A AA+R+ RA K L T
Sbjct: 196 EGAIENRGAGLAFADDLVVLGATKGILRKAVVQIELWAGRWEMEINPKKCGVMVFGGDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAGNGGALT----AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.090e-22 Identity = 52/138 (37.68%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 295 MLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWM 708
M S + KG++ + PFL IP+ ++ ++ V++ RLL+GAE+YGMNK++T Q LL++ +++ G++ VS + +W E G PPI A+AA+RRAR QK + L T + L++ P+ TW++GT W+
Sbjct: 1 MASACLKKGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWL 138
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR) HSP 1 Score: 101 bits (251), Expect = 7.820e-21 Identity = 72/237 (30.38%), Postives = 112/237 (47.26%), Query Frame = 1
Query: 4 KGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEEPFIHRCRTWVTGTNTWMNK 714
+G ++ L FADDLV + +R + + QV W EM + +KCG++ + I +P V YTYLG+ +L +++ R KG+ V L LR+ + + K +V+G+VIP +L+GAEVYG T MQ ++N+ +MV G + + A+ R++G PI A AA R+ RA K L T + + R T TN W +
Sbjct: 626 EGRIEEEGAGLAFADDLVVMGDNRTILRKAVIQVEMWARRWEMEINPKKCGVITFYGS----EEERVGIHIGEGPIPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAG----NCCALTAVRRDLGMMPIQAAAAGRQERAWAKFPNLRTIGASVFD-------RGGTTTTNGWTGR 847
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Match: A0A4P9X411_9FUNG (Reverse transcriptase domain-containing protein n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X411_9FUNG) HSP 1 Score: 100 bits (248), Expect = 1.430e-20 Identity = 68/228 (29.82%), Postives = 109/228 (47.81%), Query Frame = 1
Query: 22 RIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSDRVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVVIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMN-RNSTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNTWVRQLVEE-----PFIHRCRTWV 687
R+ L+FADD+V ++ SR ++R T W +NEM VGI+KCG M + A + G VP V+ YTYL + L +M R +G + L P L +PV M+V +++ +++P L +GAE+ A P+Q + N V ++ R V+ + E+ P + + R RAL K +L TW +++ P R R+W+
Sbjct: 38 RLRLLMFADDVVLVADSRDALQRACTAFTRWADDNEMQVGIKKCGAMWIGGERP---DGTAPLLLQGAAVPEVASYTYLRIALDDHLRPSTMTRYRAQRGNAALHALRPTLGNAHLPVAMRVMLIKSILLPILTYGAELLPSAFADAAPLQRVANHALATVLQVHHRYHPVAHEVMTTELNVPLVATVMRTARQRALHKWPQLRTWAAAIIKATPAAIPRAWRRRSWI 262 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10944.1.1 >prot_A-nodosum_M_contig10944.1.1 ID=prot_A-nodosum_M_contig10944.1.1|Name=mRNA_A-nodosum_M_contig10944.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=238bp MKGGVKTRIPALLFADDLVALSRSRKGIERMTRQVTEWTAENEMSVGIQKback to top mRNA from alignment at A-nodosum_M_contig10944:1839..2552+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10944.1.1 ID=mRNA_A-nodosum_M_contig10944.1.1|Name=mRNA_A-nodosum_M_contig10944.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=714bp|location=Sequence derived from alignment at A-nodosum_M_contig10944:1839..2552+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10944:1839..2552+ >mRNA_A-nodosum_M_contig10944.1.1 ID=mRNA_A-nodosum_M_contig10944.1.1|Name=mRNA_A-nodosum_M_contig10944.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at A-nodosum_M_contig10944:1839..2552+ (Ascophyllum nodosum dioecious)back to top |