prot_A-nodosum_M_contig107.24.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig107.24.1
Unique Nameprot_A-nodosum_M_contig107.24.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length116
Homology
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BLAST of mRNA_A-nodosum_M_contig107.24.1 vs. uniprot
Match: A0A6H5JK88_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK88_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-13
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:   19 DGASLRMGSVLWASEGFNRSATTGNSGMLSPHEVFFGSRPPMPVLPFCKPAYHRIPRQTKMDRQARPCFFL 89
            +G  L +GS LWAS  FNRSAT  N G +SP E FFG +PP+ V+PF +    R+ R TK D Q+  CF+L
Sbjct:  114 NGHRLWLGSALWASACFNRSATKVNLGWMSPFEAFFGQKPPLTVVPFFQEGKMRVKRATKADVQSARCFYL 184
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig107.24.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK88_9PHAE1.340e-1350.70Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig107contigA-nodosum_M_contig107:719864..720211 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig107.24.1mRNA_A-nodosum_M_contig107.24.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig107 719862..720211 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig107.24.1 ID=prot_A-nodosum_M_contig107.24.1|Name=mRNA_A-nodosum_M_contig107.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
NKLFPDVHLDQLKGVRDPDGASLRMGSVLWASEGFNRSATTGNSGMLSPH
EVFFGSRPPMPVLPFCKPAYHRIPRQTKMDRQARPCFFLNFSYNHGSDCF
KVMDAETGRIVHSRDV
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