mRNA_A-nodosum_M_contig107.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig107.24.1
Unique NamemRNA_A-nodosum_M_contig107.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig107.24.1 vs. uniprot
Match: A0A6H5JK88_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK88_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-13
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   55 DGASLRMGSVLWASEGFNRSATTGNSGMLSPHEVFFGSRPPMPVLPFCKPAYHRIPRQTKMDRQARPCFFL 267
            +G  L +GS LWAS  FNRSAT  N G +SP E FFG +PP+ V+PF +    R+ R TK D Q+  CF+L
Sbjct:  114 NGHRLWLGSALWASACFNRSATKVNLGWMSPFEAFFGQKPPLTVVPFFQEGKMRVKRATKADVQSARCFYL 184
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig107.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK88_9PHAE1.340e-1350.70Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig107contigA-nodosum_M_contig107:719862..720211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo130969
Model size351
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000134
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QI43@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size348
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866455.5710814-CDS-A-nodosum_M_contig107:719863..7202111680866455.5710814-CDS-A-nodosum_M_contig107:719863..720211Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig107 719864..720211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig107.24.1prot_A-nodosum_M_contig107.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig107 719864..720211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig107.24.1

>prot_A-nodosum_M_contig107.24.1 ID=prot_A-nodosum_M_contig107.24.1|Name=mRNA_A-nodosum_M_contig107.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
NKLFPDVHLDQLKGVRDPDGASLRMGSVLWASEGFNRSATTGNSGMLSPH
EVFFGSRPPMPVLPFCKPAYHRIPRQTKMDRQARPCFFLNFSYNHGSDCF
KVMDAETGRIVHSRDV
back to top

mRNA from alignment at A-nodosum_M_contig107:719862..720211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig107.24.1 ID=mRNA_A-nodosum_M_contig107.24.1|Name=mRNA_A-nodosum_M_contig107.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=350bp|location=Sequence derived from alignment at A-nodosum_M_contig107:719862..720211- (Ascophyllum nodosum dioecious)
AACAAGCTCTTCCCGGACGTACATCTGGACCAACTCAAGGGAGTTCGAGA
CCCTGACGGTGCAAGTCTGCGGATGGGGTCTGTCTTGTGGGCCTCGGAAG
GCTTCAACCGCTCCGCGACCACAGGTAACAGCGGCATGCTCTCCCCCCAC
GAGGTATTTTTCGGGAGCCGCCCGCCGATGCCGGTTCTGCCATTCTGCAA
GCCGGCGTATCATCGCATCCCGCGGCAGACTAAAATGGACCGTCAAGCGC
GCCCATGCTTCTTCCTGAATTTCAGTTACAACCACGGGAGCGACTGCTTC
AAAGTGATGGACGCGGAGACAGGGAGGATCGTACACTCGCGCGACGTCAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig107:719862..720211-

>mRNA_A-nodosum_M_contig107.24.1 ID=mRNA_A-nodosum_M_contig107.24.1|Name=mRNA_A-nodosum_M_contig107.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig107:719862..720211- (Ascophyllum nodosum dioecious)
AACAAGCTCTTCCCGGACGTACATCTGGACCAACTCAAGGGAGTTCGAGA
CCCTGACGGTGCAAGTCTGCGGATGGGGTCTGTCTTGTGGGCCTCGGAAG
GCTTCAACCGCTCCGCGACCACAGGTAACAGCGGCATGCTCTCCCCCCAC
GAGGTATTTTTCGGGAGCCGCCCGCCGATGCCGGTTCTGCCATTCTGCAA
GCCGGCGTATCATCGCATCCCGCGGCAGACTAAAATGGACCGTCAAGCGC
GCCCATGCTTCTTCCTGAATTTCAGTTACAACCACGGGAGCGACTGCTTC
AAAGTGATGGACGCGGAGACAGGGAGGATCGTACACTCGCGCGACGTC
back to top